BAC Information

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BAC

Clone NameMSMg01-528D12
Chromosome4 (Build37)
Map Location 55,540,958 - 55,541,157
singlet/doubletsinglet
Overlap geneKlf4
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528D12.T7 (MSMg01no528_d12.b1)MSMg01-528D12.TJ (MSMg01no528_d12.g1)
ACCAG597387AG597388
length753745
length of high quality
(start - end)		677 (66 - 742)596 (77 - 672)
definitionCHROMAT_FILE: MSMg01no528_d12.b1 PHD_FILE: MSMg01no528_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:45 2005CHROMAT_FILE: MSMg01no528_d12.g1 PHD_FILE: MSMg01no528_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGAAATCTTTCATTTCTTTCTTTATTTCTTGCCTGACCC
AGAGATCAATGACTATAGTGTTTTTCAATTTTTACAAGTATGCAAGTTTT
CTGGTGTTTCTGTTTTTGTGGTAATTCATCTTTATTCCATGGTGGTCTGA
TAAGATACAAGGCATTATTTCACTTTTCTTGTATCTTTTGAGACTTGCTT
TGTGACAGACTATATAGTCAATTTTGGAGAAGGTCATGTGAAGTGCTAAG
AACTAGGTACATTATTTTGTATTTGGATTAGATGTTCTGTAGCTATCTTC
TAGATTCATTTGATTCAGAACTTCTGTTAGTTTCATTATTTCTTTGTTTA
GATTCTGTCTCAATGATCTGGTCATTTATGAAATTGAAGAGTTGAAATTT
CCCATTATTAATGTGTGAGGTTCAATGAGTGATTTAAGGTTTAGCAATGT
TTCTTTTACAAATTTGGGTGCCCTTGCATTTGGCACATAGATATTCAGAT
TTGAGACATCATCTTAGCATATTTTTTATTGGATAAGTATACAGTGTTCT
TCCCCCATCTCTTTTGATTAAGTTTGGCTGAAAATATGTTTTGTTAGATG
TTAGAATAACTACTCCTGCTTGAGTCTTGGGTCCTTTGCTTGGAAAACTT
CTTTCCATTTCTTTATTCTAAGGCAATGTCTATCTTTATAGTGGTGTGTT
TCT

NNTTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCTGGCAGTGTGGGTCATA
TCCACTACGTGGGATTTAAAAGAGCCTCTTCATGTGTAAGGCAAGGTGGT
CCCACCTGGAAAAGGCCCTGTCGCACTTCTGGCACTGAAAGGGCCGGTGC
CCTGTGTGTTTGCGGTAGTGCCTGGTCAGTTCATCGGCGCGGGCGAACTT
CCACCCACAGCCGTCCCAGTCACAGTCCAAGAGTTCTCATCTCAAGGCAC
ACCTGCAAACTCACACAGGCGAGAAACCTTACCACCGCGACTACTAGATT
CTTAGTTCCTCTAGTGTGAGTTACTCATTGTTGGTCTAGCAGGGTAGCAT
CCTGTAAGCCAATCTAATAAATATCCCTATGTGCATGTCACTATTCTGTA
AGTGGTGTTCTTTTAAGAAACCCTTACTAATACATTATATAAGTGGTCAT
CTCTGATTATCCTATGGGCTTTGGCAGAAATTGAATTCTGTACAATTGTA
TTTTCTTCAGATAACATCCGTAGTGCCTTTGGATGACCACTATAAATACT
GGAAATTCCTGGGGTGTTTAGCTATCTCACAGGTTGTACCTGGAACTCAT
ACTATTCTCTTAATCTTTCTCATATATGAGAATATTGTTTTGATTTTCTT
TATCTCAGAAGCACTAGTTAACTTGAATATATTAGTAGAGGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_d12.g1 MSMg01no528_d12.g1 CHROMAT_FILE:
MSMg01no528_d12.g1 PHD_FILE: MSMg01no528_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:45 2005
         (596 letters)



>mm_chr4_55540758_55541753
          Length = 996

 Score =  340 bits (176), Expect = 1e-97
 Identities = 194/200 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctcctggcagtgtgggtcatatccactacgtgggatttaaaagagcctcttcatgtg 60
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctctcctggcagtgtgggtcacatccactacgtgggatttaaaagtgcctcttcatgtg 260

                                                                       
Query: 61  taaggcaaggtggtcccacctggaaaaggccctgtcgcacttctggcactgaaagggccg 120
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 taaggcaaggtggtccgacctggaaaaggccctgtcacacttctggcactgaaagggccg 320

                                                                       
Query: 121 gtgccctgtgtgtttgcggtagtgcctggtcagttcatcggcgcgggcgaacttccaccc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 321 gtgccctgtgtgtttgcggtagtgcctggtcagttcatcggagcgggcgaatttccaccc 380

                               
Query: 181 acagccgtcccagtcacagt 200
           ||||||||||||||||||||
Sbjct: 381 acagccgtcccagtcacagt 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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