BAC Information

Click to search

BAC

Clone NameMSMg01-528J17
Chromosome4 (Build37)4 (Build37)
Map Location 31,383,380 - 31,384,07631,713,817 - 31,714,428
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC619906, LOC100040864, LOC100040891
Downstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528J17.T7 (MSMg01no528_j17.b1)MSMg01-528J17.TJ (MSMg01no528_j17.g1)
ACCAG597683AG597684
length759756
length of high quality
(start - end)		703 (46 - 748)612 (78 - 689)
definitionCHROMAT_FILE: MSMg01no528_j17.b1 PHD_FILE: MSMg01no528_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:15 2005CHROMAT_FILE: MSMg01no528_j17.g1 PHD_FILE: MSMg01no528_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:15 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,383,380 - 31,384,076)(31,713,817 - 31,714,428)
sequence
NAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCATTTATCCTTGTAAGTTATGAACTATTATTTCTCTATTTCAGG
GATATAAGCAGTGCAGTTTAATATATGAAACAGCTCAGCTGCGTGACCCG
CATGGCTAACAGCAATGTGGAACTGGCAGGCAGGTCTGTCAGATGATCAA
ACCCTTGCACACAATCACTCTGACCCTGCCCCTACTGCCTCCTCTGCCCT
CTTGTCAACCTCAACTTCGCCAAAAGGCAAACCTGGTCACACTTTTGCCT
GGGCACCAGACAAAATGGACAGGAAGCTTTCTCTAATGTATTCACTAGTT
GGTCTAATTTTTATAATTAATGGGATATATACGAAAGGATCCTTCCCTCT
GTCAGCATCAAGCTGTTATCAAGCTCAGCTTTTCTCCATTTATATCTTTC
TAAGCTGCACATGATCCAGAAATTCGTTCATAAGATTTCAAACCTCCGTG
AAATCCACAGGAAAGGCAGAAGTTCCATCCCACACTGAACAACACTGTGA
CTCGGGGACACAGGCTCTGGCTTGACTGGGAGACAAAGTCCTTTCCTGCC
TACTGTTCACTAATTGCTTTTGGAATATTTTCCAGTTCCTTGGTTGGAAG
CGGGCCTTGGAGTCTTCCTCATTTTATTACTAGAGCAGTCTGTCACTTAT
TTTTAGCCTTTGCTTGCTATTGACATTTTCACTAATTTTAAAAGCAGAGT
TGAGAGGCT

NACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCATGTTTTGTAGACACCCCA
GACAAGCCTTGAACAACAGCCCATTTAAATAACCACTCTACAGATCCATC
AAGGTGAGCTAAGATATTCTTCAGCCAGCCTCCCTCCAACCATGCTCTTG
GATTCAATCCTGGAAGGCAAAGGTCTTCCGTCAGCATCCCCCTGGGACCT
TTTCTGAAAAGAGAGCTGGGAGGAGCCGGCTGTGACAAAGGAGTGGAATT
TTATTTCTGCTGTTACACAAAATCATATGGTTTCCACCCACAGAAAAATC
TGCTTCTCCCTCACACTGATGCCTGCATGCAAGAGAAAGCCTTTTGCTAT
GGAGTGCATCTCTAGGGTGGGCACCTCCGATTAAGCCTTCCTGCCTGTCC
TTCAGCTCTCCTCAGCTGAGCTGAAAGAAATTGTCCAAAGTTGTAGCTGC
TTTGCACAGAGAGTAGGTTTCTAGACGTTTATAACATAGCTATTATTTGG
GTCACTGTCTCAATGTCGTTCTTCCTTTAATTCCACCTTTAAATGACTGA
AATGTCTCCAGGATGTCCTGAGAACTTGGAGTTTAATTGATCAGTCTCTT
GTGCCTGTACCTGGTGGCAAACCATCTGCTTGGCTGACCACGGATGAAGA
AATTCTTAGCTTCCAATGAACTTTCCTATGAAGTTGAGGGGGGGGGGCGG
CAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_j17.b1 MSMg01no528_j17.b1 CHROMAT_FILE:
MSMg01no528_j17.b1 PHD_FILE: MSMg01no528_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:15 2005
         (703 letters)



>mm_chr4_31383174_31384276
          Length = 1103

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatttatccttgtaagttatgaactattatttctctatttcagggatataagcag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatttatccttgtaagttatgaactattatttctctatttcagggatataagcag 266

                                                                       
Query: 67  tgcagtttaatatatgaaacagctcagctgcgtgacccgcatggctaacagcaatgtgga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcagtttaatatatgaaacagctcagctgcgtgacccgcatggctaacagcaatgtgga 326

                                                                       
Query: 127 actggcaggcaggtctgtcagatgatcaaacccttgcacacaatcactctgaccctgccc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actggcaggcaggtctgtcagatgatcaaacccttgcacacaatcactctgaccctgccc 386

                                                                       
Query: 187 ctactgcctcctctgccctcttgtcaacctcaacttcgccaaaaggcaaacctggtcaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctactgcctcctctgccctcttgtcaacctcaacttcgccaaaaggcaaacctggtcaca 446

                                                                       
Query: 247 cttttgcctgggcaccagacaaaatggacaggaagctttctctaatgtattcactagttg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttttgcctgggcaccagacaaaatggacaggaagctttctctaatgtattcactagttg 506

                                                                       
Query: 307 gtctaatttttataattaatgggatatatacgaaaggatccttccctctgtcagcatcaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtctaatttttataattaatgggatatatacgaaaggatccttccctctgtcagcatcaa 566

                                                                       
Query: 367 gctgttatcaagctcagcttttctccatttatatctttctaagctgcacatgatccagaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gctgttatcaagctcagcttttctccatttatatctttctaagctgcacatgatccagaa 626

                                                                       
Query: 427 attcgttcataagatttcaaacctccgtgaaatccacaggaaaggcagaagttccatccc 486
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 627 attcgttcataagatttcaaacctccgtgaaatccacaggaaaggcagaatttccatccc 686

                                                                       
Query: 487 acactgaacaacactgtgactcggggacacaggctctggcttgactgggagacaaagtcc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acactgaacaacactgtgactcggggacacaggctctggcttgactgggagacaaagtcc 746

                                                                       
Query: 547 tttcctgcctactgttcactaattgcttttggaatattttccagttccttggttggaagc 606
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 747 tttcctgcctactgttcactaattgcttttggaatattttccagttccttggttagaagc 806

                                                                       
Query: 607 gggccttggagtcttcctcattttattactagagcagtctgtcacttatttttagccttt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gggccttggagtcttcctcattttattactagagcagtctgtcacttatttttagccttt 866

                                                
Query: 667 gcttgctattgacattttcactaattttaaaagcaga 703
           |||||||||||||||||||||||||||||||||||||
Sbjct: 867 gcttgctattgacattttcactaattttaaaagcaga 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no528_j17.g1 MSMg01no528_j17.g1 CHROMAT_FILE:
MSMg01no528_j17.g1 PHD_FILE: MSMg01no528_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:15 2005
         (612 letters)



>mm_chr4_31713617_31714628
          Length = 1012

 Score = 1129 bits (584), Expect = 0.0
 Identities = 605/612 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcatgttttgtagacaccccagacaagccttgaacaacagcccatttaaataaccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgtcatgttttgtagacaccccagacaagccttgaacaacagcccatttaaataaccact 753

                                                                       
Query: 61  ctacagatccatcaaggtgagctaagatattcttcagccagcctccctccaaccatgctc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctacagatccatcaaagtgagctaagatattcttcagccagcctccctccaaccatgctc 693

                                                                       
Query: 121 ttggattcaatcctggaaggcaaaggtcttccgtcagcatccccctgggaccttttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttggattcaatcctggaaggcaaaggtcttccgtcagcatccccctgggaccttttctga 633

                                                                       
Query: 181 aaagagagctgggaggagccggctgtgacaaaggagtggaattttatttctgctgttaca 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaagagagctgggaggagcgggctgtgacaaaggagtggaattttatttctgctgttaca 573

                                                                       
Query: 241 caaaatcatatggtttccacccacagaaaaatctgcttctccctcacactgatgcctgca 300
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 572 caaaagcatatggtttccacccacagaaaaatctgcttctcccccacactgatgcctgca 513

                                                                       
Query: 301 tgcaagagaaagccttttgctatggagtgcatctctagggtgggcacctccgattaagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgcaagagaaagccttttgctatggagtgcatctctagggtgggcacctccgattaagcc 453

                                                                       
Query: 361 ttcctgcctgtccttcagctctcctcagctgagctgaaagaaattgtccaaagttgtagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttcctgcctgtccttcagctctcctcagctgagctgaaagaaattgtccaaagttgtagc 393

                                                                       
Query: 421 tgctttgcacagagagtaggtttctagacgtttataacatagctattatttgggtcactg 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgctttgcacagagagtaggttcctagacgtttataacatagctattatttgggtcactg 333

                                                                       
Query: 481 tctcaatgtcgttcttcctttaattccacctttaaatgactgaaatgtctccaggatgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctcaatgtcgttcttcctttaattccacctttaaatgactgaaatgtctccaggatgtc 273

                                                                       
Query: 541 ctgagaacttggagtttaattgatcagtctcttgtgcctgtacctggtggcaaaccatct 600
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgagaacttggagcttaattggtcagtctcttgtgcctgtacctggtggcaaaccatct 213

                       
Query: 601 gcttggctgacc 612
           ||||||||||||
Sbjct: 212 gcttggctgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |