BAC Information

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BAC

Clone NameMSMg01-529A04
Chromosome4 (Build37)
Map Location 146,165,075 - 146,165,625
singlet/doubletsinglet
Overlap geneOTTMUSG00000010694
Upstream geneLOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, LOC626480
Downstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529A04.T7 (MSMg01no529_a04.b1)MSMg01-529A04.TJ (MSMg01no529_a04.g1)
ACCAG597991AG597992
length739679
length of high quality
(start - end)		554 (55 - 608)260 (85 - 344)
definitionCHROMAT_FILE: MSMg01no529_a04.b1 PHD_FILE: MSMg01no529_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:48 2005CHROMAT_FILE: MSMg01no529_a04.g1 PHD_FILE: MSMg01no529_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTTTATTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATG
TGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTT
ATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTA
CCCACAACATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAA
CATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTT
AAAATTCACTGGAGAATTCTTCCAAAAGGGAAACATTTCAAATACATTGA
CGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATT
TATACAGGCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGA
CTTCATTTCAGTGCAGAAAAAATATGTAAAAAATTTTTTTATGGGAAAAA
TAGTTCTCCTGAGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTT
TCAACAGTCAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTT
TGAAAACCTTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGC
TGGCAGTAACTCTGAATATATGATAGTGAAGAAACATTTTCATTAAACTT
TTACTTGTTCACCCTCAAATATTATTATGATGAAGTCTG

TTCNNCCTTATCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGAATACTAAG
ATGGGATTGTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTT
TCTCTCCTGTATGAATTCTCTGATGAATACTAAGATTGGATTGTTTGGTA
AAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAAT
TCTCTGATGAATACTAAGATAGGATTGTTGGGTAAAGCATTTGTCACATT
CACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCTCA
ACTGCTTTTTCAGAAAGCATTTGCACATTCACTGATTTGGAAGGTTTCTC
CCTGTAGAATTCTCTGAGAATTCCCAACTGTTTTTTCGTAAGATTTGCCT
TTCCGGCTTGAAGGGTCTCTCCGATGAATTCCGAAGAAACAAATTGGATG
GTGGGAAACATTTGGCCATCCCCGGTTTTAAGGGTTCTCCCGGGAAATCT
CAAAAATTCCCAAGGTTTTTTAAAAAGAATTCCCCCCCCCCATTTTGAGG
GTTTCCCTCGGGAAACCCCGGAGAATAAAAAAGTCTTTTTAAATAAATTT
TCCCCCCCTCGGTTTTGTGGATCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_a04.b1 MSMg01no529_a04.b1 CHROMAT_FILE:
MSMg01no529_a04.b1 PHD_FILE: MSMg01no529_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:48 2005
         (554 letters)



>mm_chr4_146164871_146165825
          Length = 955

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%), Gaps = 1/551 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaatgctttactaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaatgctttactaa 264

                                                                       
Query: 65  taaaggcagactgagaattaatcagataatttatacatttaaaaaaacccttacaagtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaggcagactgagaattaatcagataatttatacatttaaaaaaacccttacaagtat 324

                                                                       
Query: 125 tttgtatgtgataaatgcagtacccacaacatcagtctgacaaatcaacagatatttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgtatgtgataaatgcagtacccacaacatcagtctgacaaatcaacagatatttcaa 384

                                                                       
Query: 185 acagtagagcaacattataaatgaaatgaatgagatagtcctttaacaagaaatatcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagtagagcaacattataaatgaaatgaatgagatagtcctttaacaagaaatatcatc 444

                                                                       
Query: 245 ttaaaattcactggagaattcttccaaaagggaaacatttcaaatacattgacggtttga 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ttaaaattcactggagaattcttccaaaagggaaacttttcaaatacattgacggtttga 504

                                                                       
Query: 305 atcctttattttggcctatctcttagaatgtaatagataatttatacaggcaagaatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcctttattttggcctatctcttagaatgtaatagataatttatacaggcaagaatctt 564

                                                                       
Query: 365 aacaaatataatatatgctgaaatatctttgacttcatttcagtgcagaaaaaatatgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaaatataatatatgctgaaatatctttgacttcatttcagtgcagaaaaaatatgta 624

                                                                       
Query: 425 aaaaatt-tttttatgggaaaaatagttctcctgaggaaatgtggcatatgttttacacg 483
           ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 aaaaaatatttttatgggaaaaatagttctcctggggaaatgtggcatatgttttacacg 684

                                                                       
Query: 484 ggtaatattcttttcaacagtcagtgctctaaactagagaattattatgaatctgaaaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggtaatattcttttcaacagtcagtgctctaaactagagaattattatgaatctgaaaac 744

                      
Query: 544 ttttgaaaacc 554
           |||||||||||
Sbjct: 745 ttttgaaaacc 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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