BAC Information

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BAC

Clone NameMSMg01-529B14
Chromosome4 (Build37)
Map Location 47,836,806 - 47,994,626
singlet/doubletdoublet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529B14.T7 (MSMg01no529_b14.b1)MSMg01-529B14.TJ (MSMg01no529_b14.g1)
ACCAG598059AG598060
length761762
length of high quality
(start - end)		715 (47 - 761)492 (77 - 568)
definitionCHROMAT_FILE: MSMg01no529_b14.b1 PHD_FILE: MSMg01no529_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:55 2005CHROMAT_FILE: MSMg01no529_b14.g1 PHD_FILE: MSMg01no529_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,836,806 - 47,837,515)(47,994,135 - 47,994,626)
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGCAAGTTTGCTTGGTTCCAAAGACTAAAATCCTAACCCTGG
ACAGACTTTCTCTTCGCTTCTGGCTGCCTCTTACTTAGGAAAAGTTTGAT
AAGTCTCATGATGTCTTTGACTGAATTTTAAAACCATATTTTTCAGACAT
ACTAATAACAGTTGTATGTAGCGAGGAAGGAGAGAAATGCTTCTAGCCAC
GGGGTATAAATAGCATGCTGATCTCCGTCTTCAGAAAGGGACCAGAAGTG
AGACTCCAGCAGGCGGAGTGACTGCACGTGAGGGAGCAGCCTCTTTGCAC
ACATGGGCACACATTGCCGAAATGGGATTGGAGTCGTCGCTGCCATCTTC
TCCACTAACGCCCACCGCCGAATGACATCACTGCCAAAGCCCAATTAGCT
CAGAGAAGACCCTGGCACTCAGTGATATTTCTTCAAGATGGCATGAAATT
CCAAATATAAATTGGGTCCGCACTGGGCGATGATTCAAGAAATCGTATTG
GCCAGTTCACAAGACTAGAAATATCCATTAGCTCAGCTTTAGAAAGTGGA
TTACCCCCTGCAAAGACAGGGGTATAATTACCTCCCTGGATCCTGAGGGA
ACATCTAGAAACAGAAAGGAAGAGTTTCTTTGGCAAAGGTGTGGTCATAT
CATAAACTGTACTTACAGGATGAAAGGAAAGTTCACAAAGATGCATCGTC
TTCCTCGGCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGACAAATCAAGAAATGAAAGC
CCAACTTCACAGTTTACCCCTCCCCCACCCACATCAATTTACTGAGAATT
GAATTCCAGAGCATTTCAGCACCTTACTCATGAACTTGTCGCTGTTCTAA
CTCCTGCTCCTGCTTTCTGAATGAAAATAGGTATGATGATTGATTATAAA
GTTAATTTAGGGAGCTAGTTAAATCTGAAACGTGACCCACTCAAGAGCCC
AGTGCCTGTGCATGTCGGACAAACACCCATGGTAGTGAGCAAGCGAGTGA
GTCATGAGAAATGATTCTGGAGCAGTCTGTATCTCAGAGTGTGTGTAGTG
GGTAAGAATATTTTGTCAAATGTTTAAACAATTACAGTTTTGCATATGAA
AGTTGAGTGTGTGGTTTATGTGTAATATCTGCCAGTTCACTCATTATCAA
AGAGAAAGTCATTGCTACTATGATCATTTTGGAATGGAACTCCAGGGCTT
CCTGCAGACGGCTCAGCAGATAAGAGCACTGGCTGCTCTTCCAGAGGACT
CCAGTTCAATTCCTAGCACCCACATAGCAGCTCACAACTGTGTCTAACTC
CAGTTTCAAAGAACCTGACACCCGCACACAGACATATAAGCAGGAAAGCA
TCTATGCACATAAAAATAAGTCACTCTGAAAAAGAAAGAAAGAAAAAGAA
AGAAAGAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_b14.b1 MSMg01no529_b14.b1 CHROMAT_FILE:
MSMg01no529_b14.b1 PHD_FILE: MSMg01no529_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:55 2005
         (715 letters)



>mm_chr4_47836601_47837715
          Length = 1115

 Score = 1357 bits (702), Expect = 0.0
 Identities = 708/710 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcagcaagtttgcttggttccaaagactaaaatcctaaccctggacagactttct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcagcaagtttgcttggttccaaagactaaaatcctaaccctggacagactttct 265

                                                                       
Query: 66  cttcgcttctggctgcctcttacttaggaaaagtttgataagtctcatgatgtctttgac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttcgcttctggctgcctcttacttaggaaaagtttgataagtctcatgatgtctttgac 325

                                                                       
Query: 126 tgaattttaaaaccatatttttcagacatactaataacagttgtatgtagcgaggaagga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgaattttaaaaccatatttttcagacatactaataacagttgtatgtagcgaggaagga 385

                                                                       
Query: 186 gagaaatgcttctagccacggggtataaatagcatgctgatctccgtcttcagaaaggga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gagaaatgcttctagccacggggtataaatagcatgctgatctccgtcttcagaaaggga 445

                                                                       
Query: 246 ccagaagtgagactccagcaggcggagtgactgcacgtgagggagcagcctctttgcaca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccagaagtgagactccagcaggcggagtgactgcacgtgagggagcagcctctttgcaca 505

                                                                       
Query: 306 catgggcacacattgccgaaatgggattggagtcgtcgctgccatcttctccactaacgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catgggcacacattgccgaaatgggattggagtcgtcgctgccatcttctccactaacgc 565

                                                                       
Query: 366 ccaccgccgaatgacatcactgccaaagcccaattagctcagagaagaccctggcactca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccaccgccgaatgacatcactgccaaagcccaattagctcagagaagaccctggcactca 625

                                                                       
Query: 426 gtgatatttcttcaagatggcatgaaattccaaatataaattgggtccgcactgggcgat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtgatatttcttcaagatggcatgaaattccaaatataaattgggtccgcactgggcgat 685

                                                                       
Query: 486 gattcaagaaatcgtattggccagttcacaagactagaaatatccattagctcagcttta 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 686 gattcaagaaatcgtattggccagttcacaagactagaaatatccattagctcggctttg 745

                                                                       
Query: 546 gaaagtggattaccccctgcaaagacaggggtataattacctccctggatcctgagggaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaaagtggattaccccctgcaaagacaggggtataattacctccctggatcctgagggaa 805

                                                                       
Query: 606 catctagaaacagaaaggaagagtttctttggcaaaggtgtggtcatatcataaactgta 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catctagaaacagaaaggaagagtttctttggcaaaggtgtggtcatatcataaactgta 865

                                                             
Query: 666 cttacaggatgaaaggaaagttcacaaagatgcatcgtcttcctcggctg 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cttacaggatgaaaggaaagttcacaaagatgcatcgtcttcctcggctg 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no529_b14.g1 MSMg01no529_b14.g1 CHROMAT_FILE:
MSMg01no529_b14.g1 PHD_FILE: MSMg01no529_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:55 2005
         (492 letters)



>mm_chr4_47993935_47994826
          Length = 892

 Score =  905 bits (468), Expect = 0.0
 Identities = 486/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagacaaatcaagaaatgaaagcccaacttcacagtttacccctcccccacccacatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agagacaaatcaagaaatgaaagcccaacttcacagtttacccctcccccacccacatca 633

                                                                       
Query: 61  atttactgagaattgaattccagagcatttcagcaccttactcatgaacttgtcgctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atttactgagaattgaattccagagcatttcagcaccttactcatgaacttgtcgctgtt 573

                                                                       
Query: 121 ctaactcctgctcctgctttctgaatgaaaataggtatgatgattgattataaagttaat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctaactcctgatcctgctttctgaatgaaaataggtatgatgattgattataaagttaat 513

                                                                       
Query: 181 ttagggagctagttaaatctgaaacgtgacccactcaagagcccagtgcctgtgcatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 ttagggagctagttaaatctgaaacgtgacccactcaagagcccagtgcctgtgcatatc 453

                                                                       
Query: 241 ggacaaacacccatggtagtgagcaagcgagtgagtcatgagaaatgattctggagcagt 300
           ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 452 ggacaaacacccatgatagtgagcaagtgggtgagtcatgagaaatgattctggagcagt 393

                                                                       
Query: 301 ctgtatctcagagtgtgtgtagtgggtaagaatattttgtcaaatgtttaaacaattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgtatctcagagtgtgtgtagtgggtaagaatattttgtcaaatgtttaaacaattaca 333

                                                                       
Query: 361 gttttgcatatgaaagttgagtgtgtggtttatgtgtaatatctgccagttcactcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttttgcatatgaaagttgagtgtgtggtttatgtgtaatatctgccagttcactcatta 273

                                                                       
Query: 421 tcaaagagaaagtcattgctactatgatcattttggaatggaactccagggcttcctgca 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcaaagagaaagtcattgctaccatgatcattttggaatggaactccagggcttcctgca 213

                       
Query: 481 gacggctcagca 492
           ||||||||||||
Sbjct: 212 gacggctcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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