NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTTTACATACAAGTTTGTGTGATTTGGATTTCCTAGC
TTTCAAGGGACTTCAATAAGAAAACCTGAATTAATCAGTGTTATTCTTTA
TTTTCCAAATTGTTTTGTTTTGTTTTATTGACCCCATAGTTTCTCTCTTA
GCCCTAAGTGTCCAGTGTGCCCATTACATTTCTAAGTACCCATTACTTCT
TCTGAAGGGCCATCTACAGAAAGCAGCCAGATCTTTCCCCATGCTTCCAT
TCTGTCTTCAAGTCGCTCTGTTTTAATTATGTTCCTCCTCCAGAACTAAA
TACTGCTTACTGAACTACCTTTTAGTGGTCGGAGGCCAAACTGCTAGATC
CTCAAGGATGACCAAAAGATGCTCAACATCTTTGAAAATTATAGCCAGGT
GGTGGTGGCACACAGCTCTAAGCTCAATACTCAATAGGCAAAGGCATAGA
GATCTCTATGTTCCAGGCCAGTCTAGAATAGAAAAACAGGTTTCTACACA
GAGAAACCCTGTCCCCAAAACCAAAATGAACCAAAACCAAAGCAAAATCC
AAACCAATACCCCTACTCACCCACTCCCCCCCCAAAAAAAAGGAAAAAAA
AGAAAAGCTCTTAAGATAAGTAATCGATTTAACACTTTTTATTTTTCTTT
TATTTTCATGCACATATCCTTTGGTCACTTTCTTGGATTTT

NNNCCCCTATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTCA
CCATGAAGGGGTGTTGAATTTTGTTAAATGCTTTCTCAGCATCTAATGAG
ATGATCATGTGTGTGTGTGTGTGTTTTTTCCTTTGAGTTTGTTAATATAG
TGGATGACATTGATGACCTTCGGTTTACTGAACCATCCCTTCATCCTTGG
TATAAACCCTACTTAATCATGATGGATGATTGTTTTGATACGTTCTTGGA
TTTGGTTTGTGAGAATTTTATTGAGTATTTTTTTCATCAATATTCAAAAG
CTCAATTGGTCTGAAGTTCTTTTTCTTTGTTGGGTCTTTGTGTGGTTTAG
GTATCAGAGCAATTGTGGCTTCATAGAACAAATTCGGTTGTTGGGAGCCG
CCCCCACATTCGCTGTCACAAGATGGCGCTGACAGCTGTGTTCTAAGTGG
TAAACAAATAATCTGCGCATGTGCCAAGGGTATTTCTCCACCCCATGTAC
TCTGCCTTCCCCGTGGCAACAACTCGGCCATGGGCTGCAGCCAATCAGGG
AGTGATACGTCCTAGGCGAAGGATAACTCTCCTAAATAGGGACGGGGTTT
CGTTTTCGTTTTTGGGGCTTGGGGCTTGCACGCTTGCCCCTGAAGATGTA
AGCAATAAAGTTTTGCCGCAGAAGATTCTGGT

Query= MSMg01no529_k06.b1 MSMg01no529_k06.b1 CHROMAT_FILE:
MSMg01no529_k06.b1 PHD_FILE: MSMg01no529_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:42 2005
         (689 letters)



>mm_chr4_25667263_25668351
          Length = 1089

 Score = 1067 bits (552), Expect = 0.0
 Identities = 595/614 (96%), Gaps = 10/614 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttacat------acaagtttgtgtgatttggatttcctagctttcaaggga 58
           |||||||||||||||      |||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattcactttacatatcgaaacaagtttgtgtgatttggatttcctagctttcaaggga 552

                                                                       
Query: 59  cttcaataagaaaacctgaattaatcagtgttattctttattttccaaattgttttgttt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cttcaataagaaaacctgaattaatcagtgttattctttattttccaaattgttttgttt 492

                                                                       
Query: 119 tgttttattgaccccatagtttctctcttagccctaagtgtccagtgtgcccattacatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgttttattgaccccatagtttctctcttagccctaagtgtccagtgtgcccattacatt 432

                                                                       
Query: 179 tctaagtacccattacttcttctgaagggccatctacagaaagcagccagatctttcccc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctaagtacccattacttcttctgaagggccatctacagaaagcagccagatctttcccc 372

                                                                       
Query: 239 atgcttccattctgtcttcaagtcgctctgttttaattatgttcctcctccagaactaaa 298
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 atgcttccactctgtcttcaagtcactctgttttaattatgttcctcctccagaactaaa 312

                                                                       
Query: 299 tactgcttactgaactaccttttagtggtcggaggccaaactgctagatcctcaaggatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tactgcttactgaactaccttttagtggtcggaggccaaactgctagatcctcaaggatg 252

                                                                       
Query: 359 accaaaagatgctcaacatctttgaaaattatagccaggtggtggtggcacacagctcta 418
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 251 acaaaaagatgctcaacatctttgaaaattatatccaggtggtggtggcacacagctcta 192

                                                                       
Query: 419 agctcaatactcaataggcaaaggcatagagatctctatgttccaggccagtctagaata 478
           ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 191 agctcaacactcaataggcaaaggcatagagatctcaatgttccaggccagcctagaata 132

                                                                       
Query: 479 gaaaaacaggtttctacacagagaaaccctgtccccaaaaccaaaatgaaccaaaaccaa 538
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 131 gaaaaacaggtttctacacagagaaaccctgtctccaaaaccaaaatgaaccaaaaccaa 72

                                                                       
Query: 539 agcaaaatccaaaccaatacccctactcacccactcc-ccccccaaaaaaaaggaaaaaa 597
           |||||||||||||||||||||||||| |||||   || ||||||||||||||||||||||
Sbjct: 71  agcaaaatccaaaccaatacccctacccaccc---ccaccccccaaaaaaaaggaaaaaa 15

                         
Query: 598 aagaaaagctctta 611
           ||||||||||||||
Sbjct: 14  aagaaaagctctta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)