Query= MSMg01no529_l21.b1 MSMg01no529_l21.b1 CHROMAT_FILE:
MSMg01no529_l21.b1 PHD_FILE: MSMg01no529_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:50 2005
(670 letters)
>mm_chr4_43981266_43982336
Length = 1071
Score = 1019 bits (527), Expect = 0.0
Identities = 639/687 (93%), Gaps = 32/687 (4%)
Strand = Plus / Plus
Query: 5 gaattctcaagcacttcccagagtccagtcgtggccagtgtggagagaaccttgcgtggg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagcacagcccagagtccagtcgtggccagtgtggagagaaccttgcgtggg 264
Query: 65 cgtcctatgatcagacaggtaggacactctcagctcc---ccgctctgctctgctagatc 121
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 265 cgtcctatgatcagacaggtaggacactc--agctcctccccgctctgctctgctagatc 322
Query: 122 taagatgaggcctctgggtgctcctcctggcactgcccttcacggttcaatgatggtaga 181
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 taagatgaggcctctgggcgctcctcctggcactgcccttcacagttcaatgatggtaga 382
Query: 182 gccacaggcccaggaagggaaagaaaacccctgaattctctgcatctgttcctgggctga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccacaggcccaggaagggaaagaaaacccctgaattctctgcatctgttcctgggctga 442
Query: 242 cctcagtagctggcccacagccagtaggctgggagcctgaagagagatgagtcagaggag 301
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctcagtagctgccccacagccagtaggctgggagcctgaagagagatgagtcagaggag 502
Query: 302 acagctcgggtgcagaagtacaagtcagaggcgcgggcaccggagactgcagcatctgta 361
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 503 acagctcgggtgcagaagtacaagtcagaggcgcgggcgctggagactgcagcatctgta 562
Query: 362 ttacttcagccggctgcgggcaccggagcgtcccgtgctttgctaaattatttatttctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 ttacttcagccggctgcgggcaccggagcgtcccgtgctttgctaaattatttatttttg 622
Query: 422 ccctgtaaatgtattgctttcataatcagaaagaaaaaaaaaagaattgagcatttttt- 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ccctgtaaatgtattgctttcataatcagaaagaaaaaaaaa-gaattgagcattttttt 681
Query: 481 cttttctttaaaaaaaaa-gaaagaaaga--ga----------gagagatggaagga--g 525
|||||||||||||||||| |||||||||| || |||||| ||||||| |
Sbjct: 682 cttttctttaaaaaaaaaagaaagaaagaaagaaagaaagaaagagagaaggaaggaagg 741
Query: 526 agagagagaa-gaaa---agaaagaaagagagagagaaagaaagaaaggaaagaaagaga 581
||||| |||| |||| ||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 742 agagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag-aaagaaagaga 800
Query: 582 gaaaggaaag-gaaag-gaaag-gaaaggaaaggaaaggaaaggaaaggaaaggaaagga 638
|| || |||| ||||| || || ||||| |||| |||||||||||||||||||||||| |
Sbjct: 801 gagag-aaagagaaagagagagagaaag-aaagaaaaggaaaggaaaggaaaggaaagaa 858
Query: 639 aaggaaaggaaaggaaaggaaaggaaa 665
|||||||||||||||||||||||||||
Sbjct: 859 aaggaaaggaaaggaaaggaaaggaaa 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_l21.g1 MSMg01no529_l21.g1 CHROMAT_FILE:
MSMg01no529_l21.g1 PHD_FILE: MSMg01no529_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:50 2005
(668 letters)
>mm_chr4_44127183_44128254
Length = 1072
Score = 824 bits (426), Expect = 0.0
Identities = 459/472 (97%), Gaps = 4/472 (0%)
Strand = Plus / Minus
Query: 1 actgaacttctctaggtgggatgtcctcaaggttctgtacagcatggtaggacccaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actgaacttctctaggtgggatgtcctcaaggttctgtacagcatggtaggacccaaatt 413
Query: 61 aaat----tggtgctaatgacagcacccctatagcaagtgctgacacacgtctgccatta 116
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 412 aaattgtctggtgcaaatgacagcacccctatagcaagtgctgacacacatctgccatta 353
Query: 117 gatattccctaagaggacagaggtaatccctggaggtctggggagaagatcctggaatca 176
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 352 gatagtccctaagaggacagaggtaatccctggaggtctggggagaagatgctggaatca 293
Query: 177 cagattgacggttgaaatgaatgaaaaaaatcactttccctgtccctacatatgactaga 236
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cagatcgacggttgaagtgaatgaaaaaaatcactttccctgtccctacatatgactaga 233
Query: 237 gcatttggcttcttctgaagctaagatgacatgggtctgaagacatagctcggttggtaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gcatttggcttcttctgaagctaagatgacatgggtctgaagacatagctcggttggtaa 173
Query: 297 tatgtttgcctagatgtgcgaagccctgggtttgatccctagcgcctcctgacaccaggc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tatgtttgcctagatgtgcgaagccctgggtttgatccctagcgcctcctgacaccaggt 113
Query: 357 gtggtggagcacacctgtaaatctagaactcaaaaggtggcggcaggagggccagggcag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gtggtggagcacacctgtaaatctagaactcaaaaggtggcggcaggagggccagggcag 53
Query: 417 cttcaactgtacgaggaatttgaggtcaaccttggttacatgagaccctgtc 468
||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 52 cttcaacagtacaaggaatttgaggtcaaccttggttacatgagaccctgtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1072
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1062
Effective search space: 698796
Effective search space used: 698796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
