Query= MSMg01no530_j22.b1 MSMg01no530_j22.b1 CHROMAT_FILE:
MSMg01no530_j22.b1 PHD_FILE: MSMg01no530_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:00 2005
(667 letters)
>mm_chr4_87887557_87888623
Length = 1067
Score = 1129 bits (584), Expect = 0.0
Identities = 593/596 (99%)
Strand = Plus / Minus
Query: 5 gaattctatactttgcaagtaaagttcatggtggttaattatgtatcaataaaggctttt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattctatactttgaaagtaaagttcatggtggttaattatgtatcaataaaggctttt 537
Query: 65 ttagtacatagttgtcaggaaaattgttttcacaaagttcaaaaccaagaaaaagtgaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttagtacatagttgtcaggaaaattgttttcacaaagttcaaaaccaagaaaaagtgaac 477
Query: 125 aaataatttgtgtataggtacacctacggataatgtgaagagacaataaaaattcacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaataatttgtgtataggtacacctacggataatgtgaagagacaataaaaattcacaca 417
Query: 185 ccaagcttaacagtgcttcagagaggcactaagaatttatatctgggattagcagagcta 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccaagcttaacagtgcttcagaaaggcactaagaatttatatctgggattagcagagcta 357
Query: 245 atgaaatgaatgaatgagatataaatccctgcatgctcacacacaccctatgggtttact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgaaatgaatgaatgagatataaatccctgcatgctcacacacaccctatgggtttact 297
Query: 305 tgtatacatacataatctggagtggctgccatattctaaaaaggagaggtggcatcatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgtatacatacataatctggagtggctgccatattctaaaaaggagaggtggcatcatga 237
Query: 365 ctaacctttattttgggacaataccccaaaacatcctctagatatctgatgctccctgta 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctaacctttattttgggacaacaccccaaaacatcctctagatatctgatgctccctgta 177
Query: 425 ccttaagttctgctggcttagaagttttggttgtcctgccagtgaatacaacagcctatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ccttaagttctgctggcttagaagttttggttgtcctgccagtgaatacaacagcctatg 117
Query: 485 aaatgtaaacttagattccctgtgggaagccacatgtgccgttgcagggtggcactggct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aaatgtaaacttagattccctgtgggaagccacatgtgccgttgcagggtggcactggct 57
Query: 545 accgctggccaccacgcatacatagacagtaaagttttttttgccaagataaggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 accgctggccaccacgcatacatagacagtaaagttttttttgccaagataaggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_j22.g1 MSMg01no530_j22.g1 CHROMAT_FILE:
MSMg01no530_j22.g1 PHD_FILE: MSMg01no530_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:00 2005
(562 letters)
>mm_chr4_87718682_87719643
Length = 962
Score = 884 bits (457), Expect = 0.0
Identities = 527/573 (91%), Gaps = 39/573 (6%)
Strand = Plus / Plus
Query: 1 caggacagctagggatacacagagaaactctgtcttgaaaaacaaaacaa---------- 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 caggacagctagggatacacagagaaactctgtcttgaaaaacaaaacaaaacaaaacaa 250
Query: 51 tgaggagaggtgtaaaaatatctactatctttcttactcaacactgtgctgggcgaggca 110
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 251 tgaggagaggtgtaaaaatatctactatctttcttactcaacactgtactgggtgaggca 310
Query: 111 tcaatctcacctagaaacgaggaggaatgctaagtgtaacaatcataaagtgccaagtgc 170
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct: 311 tcaatctcacctagaaacgagaagaaatgctaagtgttacaatcataaagtgccaagtgc 370
Query: 171 aggaagcataactgctgtcctaatgcctaggctgcagctagaggctcaggaatctgatgc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 371 aggaagcataactgctgtcctaatgcctaggctgcagctagaggctcaggaatttgatgc 430
Query: 231 taacctgggctacactatgagatcatgtctttaaaaaaagatagagctaggtgtagtggt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taacctgggctacactatgagatcatgtctttaaaaaaagatagagctaggtgtagtggt 490
Query: 291 gaaatcctttaatcccagcatgctggaggctgaggcaggaagatttctgttcgttcaagg 350
|||||||||| |||||||||||||||||||||||||
Sbjct: 491 gaaatccttt-------------------------caggaagatttctgttcgttcaagg 525
Query: 351 ccagccggggctacaaagtgaggccatctcaagacaaacataaaagaagcatttaaaatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccagccggggctacaaagtgaggccatctcaagacaaacataaaagaagcatttaaaatt 585
Query: 411 ggagataagattaattttattaaaatgctgatcagattactggtaaacatgggggagaaa 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 586 ggagataagattaattttattaaaatgctgatcagattattggtaaacatgggggagaaa 645
Query: 471 aagaaaaactaaatgtggatctgtaccttctaacattaaacaattccatttagcctaaat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aagaaaaactaaatgtggatctgtaccttctaacattaaacaattccatttagcctaaat 705
Query: 531 atttacatgttaaaaaaagaa-aaaagaaaaga 562
||||||||| ||||||| || |||||||||||
Sbjct: 706 atttacatg--aaaaaaa-aagaaaagaaaaga 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
