Query= MSMg01no530_p03.b1 MSMg01no530_p03.b1 CHROMAT_FILE:
MSMg01no530_p03.b1 PHD_FILE: MSMg01no530_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:26 2005
(725 letters)
>mm_chr4_63605746_63606871
Length = 1126
Score = 1321 bits (683), Expect = 0.0
Identities = 712/722 (98%), Gaps = 1/722 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttgttctccca-gaagagtgcttacatttcccagtgtctcaaatctttatgc 63
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcctttgttctccaaagaagagtgcttacatttcccagtgtctcaaatcttcatgc 264
Query: 64 ttgtctcagtccattgcacttgggatgcaggctagagactgaaaacctggagaggaaaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtctcagtccattgcacttgggatgcaggctagagactgaaaacctggagaggaaaca 324
Query: 124 tcttcaacaccttggaagcaagagagaaccaagtcagaggcctagaagggggatactgta 183
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 325 tcttcaacaccttggaagcaagagagaaccaagtcagaggcctagaagggagataccgta 384
Query: 184 gggctgggggtaagggcagattgcagttcacctagttaccattagtacctgaggcccttg 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggctgggggtgagggcagattgcagttcacctagttaccattagtacctgaggcccttg 444
Query: 244 ccatgccaagtcaagggcttgctgctgctatgagaatctctttcttggtatgactttggt 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatgtcaagtcaagggcttgctgctgctatgagaatctctttcttggtatgactttggt 504
Query: 304 ctttccaagtcttcctcccttagcctattttgttttcttgtggaatccattattagattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttccaagtcttcctcccttagcctattttgttttcttgtggaatccattattagattc 564
Query: 364 tgtttctctctatcactcagcaagcaagtctactctgtttatgacagaggttgttttaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttctctctatcactcagcaagcaagtctactctgtttatgacagaggttgttttaaa 624
Query: 424 acagacatcacatctctgttctttatcaatgatcattttctcaagaggtagtttctattc 483
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaacatcacatctctgttctttatcaatgatcattttctcaagaggtagtttctattc 684
Query: 484 tctccactctcctggaggcctacatagacctcattctaaggatggcagatataatacctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctccactctcctggaggcctacatagacctcattctaaggatggcagatataatacctc 744
Query: 544 atctgtcaacagagtgaaaacttcttttctacaaggcttgatgtgacctctgaattccaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atctgtcaacagagtgaaaacttcttttctacaaggcttgatgtgacctctgaattccaa 804
Query: 604 gtatcctccgggcagtataaattgatttattaatgaagagtttgtaatggggtgcctgtc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 805 gtatcctccgggcagtataaattgatttattaatgaagagtttgtaatggggtgcctatc 864
Query: 664 catctaatggtagatgtggcattgaggattctttacccgtggcgtgctgcantggtggga 723
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 865 catctaatggtagatgtggcattgaggattctttacccgtggcgtgctgcagtggtggga 924
Query: 724 gt 725
||
Sbjct: 925 gt 926
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1126
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1116
Effective search space: 797940
Effective search space used: 797940
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_p03.g1 MSMg01no530_p03.g1 CHROMAT_FILE:
MSMg01no530_p03.g1 PHD_FILE: MSMg01no530_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:26 2005
(598 letters)
>mm_chr4_63637915_63638919
Length = 1005
Score = 1065 bits (551), Expect = 0.0
Identities = 589/605 (97%), Gaps = 7/605 (1%)
Strand = Plus / Minus
Query: 1 tctgcatgccagagtctatactaagggttttacatccattatctctactaatcctcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tctgcatgccagagtctatactaagggttttacatccattatctctactaatcctcaaaa 903
Query: 61 cattcctgtgggtaccactttcaccattggaaggatgtagcaactgaagctcactgaagg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 902 cattcctgtgggtaccactttcaccattggaagggtgtagcaactgaagctcactgaagg 843
Query: 121 gaatcgacttgtcccaggctgcccaacctctcagtggtgtttgaacaattaagatcttgt 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaagagacttgtcccaggctgcccaacctctcagtggtgtttgaacaattaagatcttgt 783
Query: 181 aggttcctcagactctgtggcttgaaaaagaaaagatttgccacgtacagggagaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aggttcctcagactctgtggcttgaaaaagaaaagatttgccacgtacagggagaataaa 723
Query: 241 aagaa----aaaaaaaaaggagtggtagccgcagagatccaggtagtttctgggtcacag 296
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 aagaaaaagaaaaaaaaaggagtggtagccgcagagatctgggtagtttctgggtcacag 663
Query: 297 g---aaaaaaactctaggagcagatgtgttagatgagagaaaaagacagaaatgggtatg 353
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaaaaaaaaaactgtaggagcagatgtgttagatgagagaaaaagacagaaatgggtatg 603
Query: 354 gaaaaaattctctccgaaaacctctacgtgtttccaagcttaatgaccaaaacgggctga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaaaaaattctctccgaaaacctctacgtgtttccaagcttaatgaccaaaacgggctga 543
Query: 414 agcagggaagtagtgaggaagcaggctcccttgagactggaaattgtttcctgagttagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agcagggaagtagtgaggaagcaggctcccttgagactggaaattgtttcctgagttagc 483
Query: 474 atggtcagctgaagcaggcagaatcctaagccaaaaaacacacagagagaagccaaagga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atggtcagctgaagcaggcagaatcctaagccaaaaaacacacagagagaagccaaagga 423
Query: 534 atccagatttggggaggagaagggaaggcagcagctgtgcccctctagtcatgggctgct 593
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct: 422 atccagatttggggaggagaagggaagacagcagccgggcccctctagtcatgggctgct 363
Query: 594 tcttg 598
|||||
Sbjct: 362 tcttg 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1005
Length adjustment: 10
Effective length of query: 588
Effective length of database: 995
Effective search space: 585060
Effective search space used: 585060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
