Query= MSMg01no530_p23.b1 MSMg01no530_p23.b1 CHROMAT_FILE:
MSMg01no530_p23.b1 PHD_FILE: MSMg01no530_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:30 2005
(507 letters)
>mm_chr4_69604634_69605540
Length = 907
Score = 905 bits (468), Expect = 0.0
Identities = 496/506 (98%), Gaps = 5/506 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaaatc--ttcagaaatattttttaaccattccccccacaggccagtctcata 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctaaatcaatt-agaaatattttttaaccattccccccacaggccagtctcata 262
Query: 63 gaggcagttcctcaattgagataccttcaggttcctttttcccaggtatgcctaagtttg 122
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 263 gaggcagttcctcaattgagatacattcaggttcctttttcccaggtatgcctaagtttg 322
Query: 123 tgacgaaaaataaccagtacagcaagaatctactgaatatgtaaaatactgagagtagat 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgacgaaaaataaccagtaaagcaagaatctactgaatatgtaaaatactgagagtagat 382
Query: 183 ttatgtgttcataccacataatgtaggacatctgctattgggagatgatgtatgcttcca 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 ttatgtgttcataccacataatgtaggacatctgctgttgggagatgatgtatgcttcca 442
Query: 243 ttaatttggttttgcattgtgccatgatctatatatacaatagtaaagagatgactgtat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaatttggttttgcattgtgccatgatctatatatacaatagtaaagagatgactgtat 502
Query: 303 gaagtcttcaagctaataaaatacaagcaggggtgatgcatgccacttcttggaggagcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaagtcttcaagctaataaaatacaagcaggggtgatgcatgccacttcttggaggagcc 562
Query: 363 agaaagtggctaaccatgtcatcacatggttccttgcttcacacattgtggatgtcctat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 agaaagtggctaaccatgtcatcacatggttccttgcttcacacattgtggatgtactat 622
Query: 423 gtctcttaggtctgcattcagctatgatgatggtgagtaaggacttgca-tcctgctcat 481
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 623 gtctcttaggtctgcattcagctatgatgatggtgaataaggacttg-agtcctgctcat 681
Query: 482 atcaaacaagtgtcagagcaagcaga 507
||||||||||||||||||||||||||
Sbjct: 682 atcaaacaagtgtcagagcaagcaga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_p23.g1 MSMg01no530_p23.g1 CHROMAT_FILE:
MSMg01no530_p23.g1 PHD_FILE: MSMg01no530_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:30 2005
(500 letters)
>mm_chr4_69761556_69762452
Length = 897
Score = 920 bits (476), Expect = 0.0
Identities = 493/500 (98%), Gaps = 3/500 (0%)
Strand = Plus / Minus
Query: 1 acaggaaatccatcaaagtgtctcactatcaaagaactcacactaaaggggaggctgacc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 697 acaggaaatccatcaaagtgtctcactatcaacgaactcacactaaaggggaggctgacc 638
Query: 61 atgtcctcccttctctccttaaacatccaggggccacaagcctcagaattctgtccccat 120
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 637 atgtcctcctttctctccttaaacatccaggggccacaagcctcagaactctgtccccat 578
Query: 121 tttccacttcagtcccaacacacattacattcattcctggcccaatccatcatactgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttccacttcagtcccaacacacattacattcattcctggcccaatccatcatactgctt 518
Query: 181 caatttccatcagcctttctatttctccaccaaactaatgaccaacctgatttttctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 517 caatttccatcagcctttctatttctccaccaaactaatgaccaacctgatctttctaaa 458
Query: 241 ccaaagcgaacagtgacactgtcctgattcagtgctatgaatggctcccttccccttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccaaagcgaacagtgacactgtcctgattcagtgctatgaatggctcccttccccttatt 398
Query: 301 ggatgtagtccataggtttcctcacacctatgaccaccttccagactgacattgtgctaa 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 ggatgtagtccataggtttcctcacacctatg---accttccagactgacattgtgctaa 341
Query: 361 ttttatcggactgactttcttagtgtcctcccctctcatcgctggtcccaggtaatatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttttatcggactgactttcttagtgtcctcccctctcatcgctggtcccaggtaatatct 281
Query: 421 taaagctgcttcttgcattaaccttccaggtcattgtactcagtgtgttcccttctttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 taaagctgcttcttgcattaaccttccaggtcattgtactcagtgtgttcccttctttct 221
Query: 481 gaatgtcatattcttatcta 500
||||||||||||||||||||
Sbjct: 220 gaatgtcatattcttatcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 897
Length adjustment: 10
Effective length of query: 490
Effective length of database: 887
Effective search space: 434630
Effective search space used: 434630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
