BAC Information

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BAC

Clone NameMSMg01-531B21
Chromosome4 (Build37)
Map Location 20,945,037 - 20,945,421
singlet/doubletsinglet
Overlap genenone
Upstream geneTtpa, LOC667301, EG664800, E130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531B21.T7 (MSMg01no531_b21.b1)MSMg01-531B21.TJ (MSMg01no531_b21.g1)
ACCAG599595AG599596
length783773
length of high quality
(start - end)		614 (50 - 663)599 (79 - 677)
definitionCHROMAT_FILE: MSMg01no531_b21.b1 PHD_FILE: MSMg01no531_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:39 2005CHROMAT_FILE: MSMg01no531_b21.g1 PHD_FILE: MSMg01no531_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTCGAGTTCTTCATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAAGTAAAGATACTTTCCCAATATGTTGGTGG
TCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCTATCTTACGGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAAATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATGA
AGTGGCCATAGGTGTGTGAGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCCACTTATCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGAGATTCCACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGCTATCCTANGTTTTTGTTATTCCAGA
TGAATTTTGCAANTGCTCCNTTCTATTCATTGA

NNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATAGGCTACTCGCCTGGGT
ATTCTATCCTCTCAGTGCATCCCCCTGTTCCATCTGTCATGATATTATCC
CCAATCACATACTCCCCTCCTTACTCCTCAAACAAATGTCATGCCATGTC
CCAGGTAGGGACTTAGGGTCTCCCTGTTAAAGCAGAGTCTATGATGGCTA
CCAGAAGTCTAGGACACACAGACCAGAAAACCAAAGAGGGAACAGAAACT
AAGAAGCAGAAAAGCCATCCAACAAAGATAAACTCAGAAATCAATTCCTA
CACCTATACTCACCCCTAACCCATATGCCTAGACAAGAGAATAAGAACAT
AATTAGCAACATGCAGGACAATATGTCACAATCAGAGTCCAGGTATTGTA
TTACACCAAGCCATTAGTATTTCAATACAGCTGAAACACACACACACACA
CACACACACACACACACACACACACACACACACAAAGCACCTCAAAACCA
ATATTATGAAGATTATAGAGATCCTTAAATAACATGAATAAATCCATTAA
AGAAATTGAGGAAAGACAAACAAAAATTAGTAGAAATGAATACATTCCTA
AGAAAGCCAAAACAAAAACAAAAGCCAAACAACCAACCAAACACCTAAAC
AAATAAAACTGTTCTAGACATTGAAATGGNAATAGATGCCATAAGGAAAA
CACAAATGGGGGAAATTTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_b21.g1 MSMg01no531_b21.g1 CHROMAT_FILE:
MSMg01no531_b21.g1 PHD_FILE: MSMg01no531_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:39 2005
         (599 letters)



>mm_chr4_20945037_20946035
          Length = 999

 Score =  690 bits (357), Expect = 0.0
 Identities = 378/385 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagataggctactcgcctgggtattctatcctctcagtgcatccccctgttccatctgtc 60
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 385 cagataggctactcgcctgggtattctatcctgtcagtgcatcctcctgttccatctgtc 326

                                                                       
Query: 61  atgatattatccccaatcacatactcccctccttactcctcaaacaaatgtcatgccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgatattatccccaatcacatactcccctccttactcctcaaacaaatgtcatgccatg 266

                                                                       
Query: 121 tcccaggtagggacttagggtctccctgttaaagcagagtctatgatggctaccagaagt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccaggtagggacttagggtctccttgttaaagcagagtctatgatggctaccagaagt 206

                                                                       
Query: 181 ctaggacacacagaccagaaaaccaaagagggaacagaaactaagaagcagaaaagccat 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 ctaggacacacagaccagaaaaccaaagagggaacagaaactaaaaagcagaaaagccat 146

                                                                       
Query: 241 ccaacaaagataaactcagaaatcaattcctacacctatactcacccctaacccatatgc 300
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 145 ccaacaaagatgaactcagaaatcaattcctacacctatactcacctctaacccatatgc 86

                                                                       
Query: 301 ctagacaagagaataagaacataattagcaacatgcaggacaatatgtcacaatcagagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 85  ctagacaagagaataagaacataattagcaacatgcaggacaatatgtcactatcagagt 26

                                    
Query: 361 ccaggtattgtattacaccaagcca 385
           |||||||||||||||||||||||||
Sbjct: 25  ccaggtattgtattacaccaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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