Query= MSMg01no531_h20.b1 MSMg01no531_h20.b1 CHROMAT_FILE:
MSMg01no531_h20.b1 PHD_FILE: MSMg01no531_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:07 2005
(659 letters)
>mm_chr4_65753110_65754168
Length = 1059
Score = 1212 bits (627), Expect = 0.0
Identities = 648/655 (98%)
Strand = Plus / Plus
Query: 5 gaattcaagtgtccatcaataggtacacagatgaaattaaagagatatttctagacaaca 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcaagtgtccatcaagaggtacacagatgaaattaaagagatatttctagataaca 264
Query: 65 acaccatttagcattggaaatgaactacagctatatacagttttgcagataagtatcaaa 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatcatttagcattggaaatgaactacagctatatacagttttgcagataagtatcaaa 324
Query: 125 atcagtgtgctgaagctgaggtgtcaggcacaaaggataatatactatttccctgcactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcagtgtgctgaagctgaggtgtcaggcacaaaggataatatactatttccctgcactt 384
Query: 185 gcgtcatacagtagaagagacaaatctagtccatggggagatctgggcttgcctacagta 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatcatacagtagaagagacaaatctagtccatggggagatctgggcttgcctacagta 444
Query: 245 ggggaataaaccttgtggtatagaagttcacaaaagtcaagggtgttctcacagggatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggaataaaccttgtggtatagaagttcacaaaagtcaagggtgttctcacagggatgt 504
Query: 305 gaaatgttttcaggtgggtacatttgtcaaaacctacagaatcacaaaggataaacagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaatgttttcaggtgggtacatttgtcaaaacctacagaatcacaaaggataaacagtg 564
Query: 365 cagtttatccaacttacacctagtaaatttgaatctagaattgaatatagaaaaatacga 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 cagtttatccaacttacacctagtaaatttgattctagaattgaatatagaaaaatacga 624
Query: 425 gtgaattgttggaaaacaatcaaaataaaattaaaattgagtgtttttctgttcttaatt 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgaattgtgggaaaacaatcaaaataaaattaaaattgagtgtttttctgttcttaatt 684
Query: 485 tttctgtgtgctctttgaaaaacttcacaatttttttaaagaaatacattttcctggtgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttctgtgtgctctttgaaaaacttcacaatttttttaaagaaatacattttcctggtgc 744
Query: 545 tggggatgtagcccaggtccttgaatctccaatgaagcactctaccatggaggccacaga 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 tggggatgtagcccaggtccttgaatctccaatgaagtactctaccatggaggccacaga 804
Query: 605 agttccacaaaatgtttgcagtgaactgaatcattctgtatctaccatgggttcg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agttccacaaaatgtttgcagtgaactgaatcattctgtatctaccatgggttcg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_h20.g1 MSMg01no531_h20.g1 CHROMAT_FILE:
MSMg01no531_h20.g1 PHD_FILE: MSMg01no531_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:07 2005
(570 letters)
>mm_chr4_65947745_65948711
Length = 967
Score = 1048 bits (542), Expect = 0.0
Identities = 562/570 (98%), Gaps = 3/570 (0%)
Strand = Plus / Minus
Query: 1 cagtccctttagaagtgttcccttctcaaggaggctatgaagagctctaaacaggattta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cagtccctttggaagtgttcccttctcaaggaggctatgaagagctctaaacaggattta 887
Query: 61 ctttgattaggttgaagaaagttcttgttcacttaataagcatttttcctgagcattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctttgattaggttgaagaaagttcttgttcacttaataagcatttttcctgagcattttc 827
Query: 121 tatttgacaggcactattttagactgcagggatatacagcagtgaataacacagataaaa 180
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tgtttgacaggcaccattttagactgcagggatatacagcagtgaataacacagataaaa 767
Query: 181 acttatgtacctgtagggtttattatgtaatgtgtgtctgtacatggtgagggatactac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acttatgtacctgtagggtttattatgtaatgtgtgtctgtacatggtgagggatactac 707
Query: 241 caaaaataatgatgtataaatctgtcaatagtgaatttggttaggggctggaggcagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 caaaaataatgatgtataaatctgtcaatagtgaatttggttaggggctggaggcagact 647
Query: 301 gtctgatttcttccatactagtccttccatattggatgatttggggcataccccaggcac 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 646 gtctgatttcttccatactagtccttccatattggatgatttggggcatatcccaggcac 587
Query: 361 ccattgctgtgtttgcaaaacaaagatacaggtaagatgcctgatgccaaggttgtgaat 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ccattg---tgtttgcaaaacaaagatacaggtaagatgcctgatgccaaggttgtgaat 530
Query: 421 ctggatgcgtttgtgtctccttgtgatttcaaaggttgtcatggaagtgaagagcaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctggatgcgtttgtgtctccttgtgatttcaaaggttgtcatggaagtgaagagcaattt 470
Query: 481 catgagctgttatttggatttagtccccagagccagagtaatggatgtctatgcttggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 catgagctgttatttggatttagtccccagagccagagtaatggatgtctatgcttggtg 410
Query: 541 ggaacaagagcttagaagccattttcactg 570
|||||||||| |||||||||||||||||||
Sbjct: 409 ggaacaagagtttagaagccattttcactg 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 967
Length adjustment: 10
Effective length of query: 560
Effective length of database: 957
Effective search space: 535920
Effective search space used: 535920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
