BAC Information

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BAC

Clone NameMSMg01-531O02
Chromosome4 (Build37)
Map Location 18,858,221 - 18,858,857
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O02.T7 (MSMg01no531_o02.b1)MSMg01-531O02.TJ (MSMg01no531_o02.g1)
ACCAG600173AG600174
length758756
length of high quality
(start - end)
635 (51 - 685)571 (82 - 652)
definitionCHROMAT_FILE: MSMg01no531_o02.b1 PHD_FILE: MSMg01no531_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:39 2005CHROMAT_FILE: MSMg01no531_o02.g1 PHD_FILE: MSMg01no531_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATTAGGTACCTTACAAACAAGGGAATGGGAATAAGGGCA
TACTATGAAACCTTCTAGCTAATAAAATACAGTCTAGCTTTTGTCACTGG
AAGTTTAAGTCAAAAGAGTTCAACCCTACAGTCAAATTAATAATATTCTA
GACAGATTCATTTACTCAGGGCATTCTAAAGATCAAAACTATCTGAAACA
AACTGTGCATCACTCACTGCATCTTAATGAAAATCTACTAAGAGTCATCC
ACCCAACCCCTGAAATGACTGCTACCACAAGAAGAGTAATTTGCCCATAC
TCCATACTCTGAGCACTAAGCAGTAAATGCACTCATCGGCCTGAGTGCAA
AGCTCCCAACAAGTGTACATGCTCTCATTTTAGTATGTGCCTCTATTGTG
AGCTATAGCAAATGGAGAAACGACAGCTATTTACCCACACCAAAATACTC
TTTTGCATTTCAAAAGATCAAATAGAGTATTTTGTACAAGAAGACAAAAA
AAAAAAAGGCAAATGCACTAGGAAGAAAAATAAATTATTCAAACTCCCAT
ACTATAAGCAAGCCCTCAGAATTTTTGATGGCCCTCTGCCCTGCCTGAGT
TTGTTTGGCGGGGGGGGGGGGGCAGATTCTGGGAGTCAACTCAAACCTCT
AGGCAAAACCTCCAGTGTATAAAAATTTCTAAGGAGGATAGGAGAGGGCA
AAACTAAA
GTTTTTCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTT
TAACATGAAGGGTTGTTGAATTTTGGTAAATACTTTTTCAGCATCTAATG
AGGTAATCATGTGTTTTTTTTCCCTTGAGTTTGTTTATATAGTGGACTAT
GTTGATGGATTTATATATATTGAACCATCCCTACATCCCTGGGATGAAGC
CTACTTGATTGTCGTGAATGATTGTTTTGATGTGATCTTGGATTTGGTTT
CTAGAATTTTATTGAGTATTTTTTAATTGGATATTTTATTTATTTACATT
TCAAATGTTGTCCCATTTCCCAGCCTCCCCTCTGCAAATCCCCTATCCTA
TCCTCCCTGATCCTACTTCTATGAGGATGCTCCTTCACCCACCTACCCAC
ACCCACCTCACTGCCATAGCATTTCTCTACACTGGGTCATCAAGGCTTCA
CAAGACCAAGGGCCTCCCCTCTCATTAATGCCAGATAAGACCCCTTCAGC
TCCATCAGTCCTTCCCATAAATCCTCCATTGTGGTCCCTATGCTTAGTCA
GATGGTTGACTGCAAACATCTGCATCTGTATTGGTCCAGAACTGGCAGAG
CTTCTCAAGAGACAGCTGTATCCAGCTCCTGTCAGCAAGCACTTTTTXXX
XXXXXXXXXXXXXXXXGGGATTGGTGTCTGCATGTGAGATGGATACCCAG
GTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o02.b1 MSMg01no531_o02.b1 CHROMAT_FILE:
MSMg01no531_o02.b1 PHD_FILE: MSMg01no531_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:39 2005
         (635 letters)



>mm_chr4_18858017_18859059
          Length = 1043

 Score = 1102 bits (570), Expect = 0.0
 Identities = 619/640 (96%), Gaps = 12/640 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattaggtaccttacaaacaagggaatgggaataagggcatactatgaaacctt 64
           ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattaggcaccttataaaaaagggaatgggaataagggcatactatgaaacctt 264

                                                                       
Query: 65  ctagctaataaaatac--agtctagcttttgtcactggaagtttaagtcaaaagagttca 122
           ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 ctagctaataaaatacggagtctagcttttgtcactggaagtttgagtcaaaagagttca 324

                                                                       
Query: 123 accctacagtcaaattaataatattctagacagattcatttactcagggcattctaaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 accctacagtcaaattaataatattctagacagattcatttactcagggcattctgaaga 384

                                                                       
Query: 183 tcaaaactatctgaaacaaactgtgcatcactcactgcatcttaatgaaaatctactaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaaactatctgaaacaaactgtgcatcactcactgcatcttaatgaaaatctactaag 444

                                                                       
Query: 243 agtcatccacccaacccctgaaatgactgctaccacaagaagagtaatttgcccatactc 302
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccatccatccaacccctgaaatgactgctaccacaagaagagtaatttgcccatactc 504

                                                                       
Query: 303 catactc----tgagcactaagcagtaaatgcactcatcggcctgagtgcaaagctccca 358
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catactccgtctgagcactaagcagtaaatgcactcatcggcctgagtgcaaagctccca 564

                                                                       
Query: 359 acaagtgtacatgctctcattttagtatgtgcctctattgtgagctatagcaaatggaga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaagtgtacatgctctcattttagtatgtgcctctattgtgagctatagcaaatggaga 624

                                                                       
Query: 419 aacgacagctatttacccacaccaaaatactcttttgcatttcaaaagatcaaatagagt 478
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgacagctatttacccacaccaaaatactcttttgcatttcaaaagatcaaatagagt 684

                                                                       
Query: 479 attttgtacaagaagacaaaaaaaaaaaa-ggcaaatgcactaggaagaaaaataaatta 537
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 attttgtacaagaagacaaaaaaaaaaaaaggcaaatgcactaggaagaaaaataaatta 744

                                                                       
Query: 538 ttcaaactcccatactataagcaagccctcagaatttttgatggccctctgccctgcctg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcaaactcccatactataagcaagccctcagaatttttgatggccctctgccctgcctg 804

                                                   
Query: 598 agtttgtttggcggggg--ggggggggcagattctgggag 635
           |||||||||||||||||  |||||||    ||||||||||
Sbjct: 805 agtttgtttggcgggggttgggggggt---attctgggag 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1043
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1033
Effective search space:   645625
Effective search space used:   645625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)