BAC Information

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BAC

Clone NameMSMg01-531P14
Chromosome4 (Build37)
Map Location 104,301,535 - 104,473,030
singlet/doubletdoublet
Overlap geneDab1, C8b
Upstream geneEG665460, LOC622315
Downstream geneC8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531P14.T7 (MSMg01no531_p14.b1)MSMg01-531P14.TJ (MSMg01no531_p14.g1)
ACCAG600244AG600245
length756755
length of high quality
(start - end)		644 (47 - 690)659 (79 - 737)
definitionCHROMAT_FILE: MSMg01no531_p14.b1 PHD_FILE: MSMg01no531_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:46 2005CHROMAT_FILE: MSMg01no531_p14.g1 PHD_FILE: MSMg01no531_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,472,390 - 104,473,030)(104,301,535 - 104,302,193)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTAGTGCCTTCTTTAAGTTCTGCTTCACTGTGCTGGAGTATG
CAAAGTCTGTGGCTGTCACAAGCTCATACAGGGGCTCAGCCTGGGACAGA
AGAGACAAAACACACATCACCTAGAGGCCAAAGCAAAGCTACAGGGGAAG
GACAGTTGGAGAGGGCAGTGTACAGAGAATGCAGGAGGATACACCAGAAC
AGGGCACATGCTACATACAGCATGCAGCTAGATGCCCTCCTCTCTGCCTC
CCCCACCTGGGAGATACAAGTTCACATGTTCAGGCTCAATTCAACTAACA
AGGAATACCTACTATGTGCTAGATATGAATCTAAAATAACTGTAATATGA
GAATCTATTCCTAGGGACTTCCGAAGCCGGAGGCAGACACTAGTGTAAAC
TAGTGGCTTACAGACACTCTGACTTGAGATCTCTCAACCGCAGGAAGGCA
AGAAAGTGATTCCTCTTTAGTGGAAGTGTATTGTGAACTTCCCAGGCTAG
AGACAGGTTCTGTCAAGAGCCCAGCCAGCTCCTCCGTCATGAGAAGCATA
AATCTCCCAGGGTACCATGCCGCCAAGCGGTGTTCCACAGGTATGGCGGG
TCAAATGCATTTCTGCCTTGATATTTTCAATTCACGATAGGTTTATCCAG
CCCCAGCCCCACAGTGGGTCAAGGCACAAGGTTTCTGTACCACACGGTTT
CACACA

TTCCCAATTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGGCGCAGCCCCATGCATAC
ACTTAAAAACTCCTCCATGTGCCGCAGTGATAAAAAGAATCTTCTAGGAT
CGCCAGTCTCTCTGTAGCTTCCAATGTCCATTCACTTTGCCCCTCACAGC
TGATCCTCAACATTAACCTTACAAGGTACACATCACTGGATGGATCTGAA
GCTCAGAGGAGTTAATTGCTGGTCCAGAGGCGTATGATTGTAATTGATGG
AGCATCATTCTTATTTACATCTGATGTCTTTTCTTGCTTGTAAAAGCAAG
ATATAGTTATTGTAGAAAATTTATAAGACACAATGACATAATGAACAAGA
TAAAAATCCTCTGAAATACCACTAATTAGAAAACTAGCTAATATCTTACA
TGAATATATTTTAAGACGATATTATAGTTAATTATACATGTTGCTTTATA
GTCTACATTGTTACTTATCTACAAGTTTCCATATTGAGTATTTCTCTACA
AATCATTTTCAGCCATGGAAGCATCATAGCATAGGAGACACACAGAATTA
TTATAATGACAAAAACAGCATATTGTTAGCCCATGGAGGTTGTATCTATA
TCTTAGAGGACATTTCTCTTCATATCTTTGATTATTTCTCTCATTTAAAA
CCTGAAATTTCTGGATCAGCATGTATGTGTATTTTAAGACTTTTGATCTT
ATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_p14.b1 MSMg01no531_p14.b1 CHROMAT_FILE:
MSMg01no531_p14.b1 PHD_FILE: MSMg01no531_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:46 2005
         (644 letters)



>mm_chr4_104472256_104473299
          Length = 1044

 Score = 1232 bits (637), Expect = 0.0
 Identities = 640/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttctagtgccttctttaagttctgcttcactgtgctggagtatgcaaagtctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ggaattcttctagtgccttctttaagttctgcttcactgtgctggagtatgcaaagtctg 716

                                                                       
Query: 64  tggctgtcacaagctcatacaggggctcagcctgggacagaagagacaaaacacacatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tggctgtcacaagctcatacaggggctcagcctgggacagaagagacaaaacacacatca 656

                                                                       
Query: 124 cctagaggccaaagcaaagctacaggggaaggacagttggagagggcagtgtacagagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctagaggccaaagcaaagctacaggggaaggacagttggagagggcagtgtacagagaa 596

                                                                       
Query: 184 tgcaggaggatacaccagaacagggcacatgctacatacagcatgcagctagatgccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgcaggaggatacaccagaacagggcacatgctacatacagcatgcagctagatgccctc 536

                                                                       
Query: 244 ctctctgcctcccccacctgggagatacaagttcacatgttcaggctcaattcaactaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctctctgcctcccccacctgggagatacaagttcacatgttcaggctcaattcaactaac 476

                                                                       
Query: 304 aaggaatacctactatgtgctagatatgaatctaaaataactgtaatatgagaatctatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaggaatacctactatgtgctagatatgaatctaaaataactgtaatatgagaatctatt 416

                                                                       
Query: 364 cctagggacttccgaagccggaggcagacactagtgtaaactagtggcttacagacactc 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cctagggacttccaaagccggaggcagacactagtgtaaactagtggcttacagacactc 356

                                                                       
Query: 424 tgacttgagatctctcaaccgcaggaaggcaagaaagtgattcctctttagtggaagtgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgacttgagatctctcaaccgcaggaaggcaagaaagtgattcctctttagtggaagtgt 296

                                                                       
Query: 484 attgtgaacttcccaggctagagacaggttctgtcaagagcccagccagctcctccgtca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 attgtgaacttcccaggctagagacaggttctgtcaagagcccagccagctcctccgtca 236

                                                                       
Query: 544 tgagaagcataaatctcccagggtaccatgccgccaagcggtgttccacaggtatggcgg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgagaagcataaatctcccagggtaccatgccgccaagcggtgttccacaggtatggcgg 176

                                                    
Query: 604 gtcaaatgcatttctgccttgatattttcaattcacgatag 644
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gtcaaatgcatttctgccttgatattttcaattcacgatag 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_p14.g1 MSMg01no531_p14.g1 CHROMAT_FILE:
MSMg01no531_p14.g1 PHD_FILE: MSMg01no531_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:46 2005
         (659 letters)



>mm_chr4_104301335_104302393
          Length = 1059

 Score = 1220 bits (631), Expect = 0.0
 Identities = 652/659 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggcgcagccccatgcatacacttaaaaactcctccatgtgccgcagtgataaaaaga 60
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tatggcgcagcctcatgcatacacttaaaaactcctccatgtgccacagtgataaaaaga 260

                                                                       
Query: 61  atcttctaggatcgccagtctctctgtagcttccaatgtccattcactttgcccctcaca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttctaggattgccagtctctctgtagcttccaatgtccattcactttgcccctcaca 320

                                                                       
Query: 121 gctgatcctcaacattaaccttacaaggtacacatcactggatggatctgaagctcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgatcctcaacattaaccttacaaggtacacatcactggatggatctgaagctcagag 380

                                                                       
Query: 181 gagttaattgctggtccagaggcgtatgattgtaattgatggagcatcattcttatttac 240
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttaattgctggtccagaggcatgtgattgtaattgatggagcatcattcttatttac 440

                                                                       
Query: 241 atctgatgtcttttcttgcttgtaaaagcaagatatagttattgtagaaaatttataaga 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgatgtcttttcttgcttctaaaagcaagatatagttattgtagaaaatttataaga 500

                                                                       
Query: 301 cacaatgacataatgaacaagataaaaatcctctgaaataccactaattagaaaactagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaatgacataatgaacaagataaaaatcctctgaaataccactaattagaaaactagc 560

                                                                       
Query: 361 taatatcttacatgaatatattttaagacgatattatagttaattatacatgttgcttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatatcttacatgaatatattttaagacgatattatagttaattatacatgttgcttta 620

                                                                       
Query: 421 tagtctacattgttacttatctacaagtttccatattgagtatttctctacaaatcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtctacattgttacttatctacaagtttccatattgagtatttctctacaaatcattt 680

                                                                       
Query: 481 tcagccatggaagcatcatagcataggagacacacagaattattataatgacaaaaacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagccatggaagcatcatagcataggagacacacagaattattataatgacaaaaacag 740

                                                                       
Query: 541 catattgttagcccatggaggttgtatctatatcttagaggacatttctcttcatatctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catattgttagcccatggaggttgtatctatatcttagaggacatttctcttcatatctt 800

                                                                      
Query: 601 tgattatttctctcatttaaaacctgaaatttctggatcagcatgtatgtgtattttaa 659
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 tgattatttctctcatttaaaacctggaatttctggatcagcatgtatgtgtattttaa 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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