BAC Information

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BAC

Clone NameMSMg01-532B24
Chromosome4 (Build37)
Map Location 69,232,694 - 69,232,973
singlet/doubletsinglet
Overlap genenone
Upstream geneDbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532B24.T7 (MSMg01no532_b24.b1)MSMg01-532B24.TJ (MSMg01no532_b24.g1)
ACCAG600359AG600360
length813756
length of high quality
(start - end)		---598 (84 - 681)
definitionCHROMAT_FILE: MSMg01no532_b24.b1 PHD_FILE: MSMg01no532_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:58 2005CHROMAT_FILE: MSMg01no532_b24.g1 PHD_FILE: MSMg01no532_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTTCTTTTTTNAGTNNNNNNNNNNNNNNNGGTNNNTCNNNNNNA
AACATAATAATTTTGGNCGGCCGCTAAATACGAACTCNNNCTATAGTTGC
ANANGNNAGCGGGCGGGAAATTNCNNNTTCTTTATTGTCCCCTCTANNCC
ATCGATCATTAAGGATAATGCCTTTTTAAAAATCCCAGGGTCCTAACCTT
TTTTTCCAGGGTGTGGTTTAAGGGGGTGGTCCTCGGGAAATTGGGGGCCA
AAAAGGGGGGGCTTTTCTGGGGGTTTCCCTAAAAAAAAGGGGGGAAGGGG
GGCCCCTGGGGTCTCCTCTGGTTATAAAAAGAAAATTTCTTTAACGGTTT
TACCTTCTTTCCCCCCCACCCGGGGGGGGAAACTCTCCGGGGGGGGAAAG
AAAGAGGGGTGAAAAAAAAAGGGGTCTTCTTCTTAAAAAAAAAAAAAAAA
AAACCCCCCCCCCCCGCGGGGGGGTGTTTTTTTTGTTGCCCCCACCCCCC
CAACACAAAAGAAGGGGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCT
CCCTCTCTTCTCTAAAAAAAAAAAGGGGGGGGGGGGAGAAGAAAAAAAAA
AACTCTCTTTGTGTTGGGGGGGGAGGGAGATCCCCCCCCCCCTCTCCCCC
TCTCTCCCTCAGAGGAGAGGGGGGGGGAGGAGGAATTTANNNTNGTGTGT
GGGGGGGGGGGGGGGTGGAGGCCCCCCCCCCCCCCCCCCCCCCCCCCGCC
CCCGAGGGGGGGGGGGGGGGGGGNGAGAGAGGATAAAACAAATTTTTTTA
TATTTTTTTCTCT

NNNNNNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGTTGTAAGGAGGA
TGGGAGACAATGAAAGTAACAAAACATACAAAAGCATAAAGGAAGAAAAG
TAGAAGGATCAAGCATTTGAATGTAGTTCAGGTTTAGCAAGTGTGAAGCT
ATGAGACCTCTGGCTGGTTGAATCTCTGAACAAGCTCTACCTTATCTGTA
GGCTTCAGTACCTCCTCAGACCAAAGACAAGGTTGTGCTAATAAAAGACC
TACAAAAATAAAATAATCTTCAGGTTTAAAAAGTAGCTTTTAATCACTAG
AAAGAACATTTCAATCAGTCTGGCGGTTCCTCAGAAAAATCAGTCTGGCG
GTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_b24.g1 MSMg01no532_b24.g1 CHROMAT_FILE:
MSMg01no532_b24.g1 PHD_FILE: MSMg01no532_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:58 2005
         (598 letters)



>mm_chr4_69232494_69233491
          Length = 998

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagttgtaaggaggatgggagacaatgaaagtaacaaaacatacaaaagcataaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagttgtaaggaggatgggagacaatgaaagtaacaaaacatacaaaagcataaagga 260

                                                                       
Query: 61  agaaaagtagaaggatcaagcatttgaatgtagttcaggtttagcaagtgtgaagctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaagtagaaggatcaagcatttgaatgtagttcaggtttagcaagtgtgaagctatg 320

                                                                       
Query: 121 agacctctggctggttgaatctctgaacaagctctaccttatctgtaggcttcagtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacctctggctggttgaatctctgaacaagctctaccttatctgtaggcttcagtacct 380

                                                                       
Query: 181 cctcagaccaaagacaaggttgtgctaataaaagacctacaaaaataaaataatcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcagaccaaagacaaggttgtgctaataaaagacctacaaaaataaaataatcttcag 440

                                                   
Query: 241 gtttaaaaagtagcttttaatcactagaaagaacatttca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaaaaagtagcttttaatcactagaaagaacatttca 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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