BAC Information

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BAC

Clone NameMSMg01-532E20
Chromosome4 (Build37)
Map Location 92,392,062 - 92,392,400
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532E20.T7 (MSMg01no532_e20.b1)MSMg01-532E20.TJ (MSMg01no532_e20.g1)
ACCAG600495AG600496
length755755
length of high quality
(start - end)		647 (52 - 698)644 (79 - 722)
definitionCHROMAT_FILE: MSMg01no532_e20.b1 PHD_FILE: MSMg01no532_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:11 2005CHROMAT_FILE: MSMg01no532_e20.g1 PHD_FILE: MSMg01no532_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTAAACATGCCTAAACATAATAAAAGCAACATACAGCA
AACCAAAAGGCAGCATCAAGCTAAATGGAGAGAAACTTAAAGAAATTCCA
CTAACATCAGGAACAAGGCAAGGCTGCTTATTCGCTCCATGTCAATTCAA
TATAGTACTTGAAATTCTAGACAGAGCCATTATAGTACAATAGGAGATGA
AGGGAATACAAACTGGAAAGAAAGAAGTCAAGGTATCACTCGTCGTGGAT
GGTATGATAGTGTACATAAGCATCCCCAAAATTCTACCAGAGAGCTCTTA
CAGATAAAACACCTTCAGCGAAGTGGCAGGATATAAAATTAACTCAAAGA
AATCAGTAGCCCTCCCTTATACAAATGATAAATAAGCTGAGAAGGATATC
AGGGAAACAACTGACTTTAAGATAGCCATAGATACTATAAAGTATCTTGG
TATAAGTCTAAACAAGTAAGTGAAAGATCTGTATGGCAAGAACTTCGACT
TCTTGTCTATTTAAAACTTTGAAATTTTAAAAGATATGCCTTCTTGCAAC
TGTATTTGGTTTCAAAAGATTTTAAATACAGTTTACAACTGAGGAATTAA
AATTTCCTTATCACAAATAACTCGAGAGCATCCAATATTTGCTTGAGTGC
TGAGAGAATGAGGCAGCGAAGAGAACAAAGGTTTAAGTGCAATAGATTCT
TGAGG

NNNGGCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTGCCTATTGAG
TGACTTTCAGAATTGACTCTATTATTACACTATCACTTAGAATAAAAGCC
AAGTGGGTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCAGG
CTGTTTTTAAAGTATTACATTACTCATGAGATGGTTAGCTAGAGCAGAAC
TCCCTAATTAGAACCATGACTTGGGAGTGAAAGCCCCAGGCCTAGGAGTG
TAAAGACCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGAGC
TGATTTTGTCTCAGTTGTTTTATTGACCAGTTCCTGCCAGTCTTTGTGTT
TACATTCCTCTGTTTTGTGTAAGAGTCATTAAGCATCCGGTAACCTCATT
TGTACCTTGTCAATGTGTCACCTAACTTTCCTATTTTCTTCTGTATAAAA
TGTTTGATGCTCAATTTGAAAAATTACATTCAGATTCTACACAACCTCTC
ATGTTGATTCTGTCTGTCATTCATTTTGCAGAGTCCTTGTCCACCTGCAA
CCAGAGACCCATTCTATGCAGACAGGGACCAAGAAGGTCTGTGGCAGCCA
ACCATTGGACTGAGCATGAGTTCCCAATGAAGGAGTTAGAGAAAAGGACT
GAAGGAGTTGAAGGGGTTTGCAACCCATAAGAAAAACAACAATATCTACC
AACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_e20.b1 MSMg01no532_e20.b1 CHROMAT_FILE:
MSMg01no532_e20.b1 PHD_FILE: MSMg01no532_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:11 2005
         (647 letters)



>mm_chr4_92391354_92392400
          Length = 1047

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                        
Query: 309  caccttcagcgaagtggcaggatataaaattaactcaaagaaatcagtagccctccctta 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 caccttcagcgaagtggcaggatataaaattaactcaaagaaatcagtagccctccctta 988

                                                                        
Query: 369  tacaaatgataaataagctgagaaggatatcagggaaacaactgactttaagatagccat 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  tacaaatgataaataagctgagaaggatatcagggaaacaactgactttaagatagccat 928

                                                                        
Query: 429  agatactataaagtatcttggtataagtctaaacaagtaagtgaaagatctgtatggcaa 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  agatactataaagtatcttggtataagtctaaacaagtaagtgaaagatctgtatggcaa 868

                                                                        
Query: 489  gaacttcgacttcttgtctatttaaaactttgaaattttaaaagatatgccttcttgcaa 548
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  gaacttcgacttcttgtctctttaaaactttgaaattttaaaagatatgccttcttgcaa 808

                                                                        
Query: 549  ctgtatttggtttcaaaagattttaaatacagtttacaactgaggaattaaaatttcctt 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  ctgtatttggtttcaaaagattttaaatacagtttacaactgaggaattaaaatttcctt 748

                                                   
Query: 609  atcacaaataactcgagagcatccaatatttgcttgagt 647
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 747  atcacaaataactcgagagcatccaatatttgcttgagt 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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