Query= MSMg01no532_f13.b1 MSMg01no532_f13.b1 CHROMAT_FILE:
MSMg01no532_f13.b1 PHD_FILE: MSMg01no532_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:15 2005
(558 letters)
>mm_chr4_13875378_13876334
Length = 957
Score = 874 bits (452), Expect = 0.0
Identities = 546/608 (89%), Gaps = 53/608 (8%)
Strand = Plus / Minus
Query: 1 ttagtcctttttagtttctcagttatatgaatcaataaaatacttttctttgtataatat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 687 ttagtcctttttagtttctcagttatatgaatcaataaaatacttttctttgcataatat 628
Query: 61 caacctttgcctcctgagaaatagagctctaaaatggagcaataggagcataaagccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caacctttgcctcctgagaaatagagctctaaaatggagcaataggagcataaagccatg 568
Query: 121 tgcttaactggcacatgggtgtcagttccgtggctaactctctttgttcaacagttgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgcttaactggcacatgggtgtcagttccgtggctaactctctttgttcaacagttgcaa 508
Query: 181 gattgatcaaggcgtgatgactgaataccatcaatcgttgtgcacacagtttcagaagaa 240
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 507 gattgatcaaggcgtgctgactgaataccatcaatcattgtgcacacagtttcag-agaa 449
Query: 241 ggcgcatgtttactgcctcatccctacctactggccagggaccctgagagatcccagtat 300
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 448 ggcacatgtttactgcctcatccctacctactggccagggaccctgagagattccagtat 389
Query: 301 tatttatgctaagcaacacaaaagaaaatttgggttttagact-ctattttatttaattc 359
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 388 tatttatgctaagcaacacaaaagaaaatttgggttttaga-tgctattttatttaattc 330
Query: 360 tcttttgacctaaatgccacacacttggaattgtttctgcataattgagtctttatgatt 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 329 tcttttgacctaaatgccacacacttggaattgtttctgcataactgagtctttatgatt 270
Query: 420 ggtgtcatcatgggcatcccagagaacttaacaacaatttgatcatttgaataagtatta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 269 ggtgtcatcatgggcatcccagagaacttaacaacaatttgatcatttgaataagtacta 210
Query: 480 aaaaaaaaa---acaa-------------------------------------------- 492
||||||||| ||||
Sbjct: 209 aaaaaaaaacaaacaaaaaaaaaaaaaacaaaacaaaaaaaaaacaaaaaaaacaaaaaa 150
Query: 493 -gtataggcccaca-atttaaggatctttctttaatttccatcactacagaggagcagtg 550
| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 149 cg-atatgcccacacatttaaggatctctctttaatttccatcactacagaggagcagtg 91
Query: 551 attttttt 558
||||||||
Sbjct: 90 attttttt 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_f13.g1 MSMg01no532_f13.g1 CHROMAT_FILE:
MSMg01no532_f13.g1 PHD_FILE: MSMg01no532_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:15 2005
(646 letters)
>mm_chr4_13767369_13768414
Length = 1046
Score = 1187 bits (614), Expect = 0.0
Identities = 644/662 (97%), Gaps = 16/662 (2%)
Strand = Plus / Plus
Query: 1 ttgggactaaccttcaaaggggagatttttatgcatatttgccacactgagcaactgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttgggactaaccttcaaaggggagatttttatgcatatttgccacactgagcaactgagt 244
Query: 61 tacatagttactcactaaaattaatgacaccaaccaggt--------ca----tttggt- 107
||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 245 tacatagttactcactaaaattaatgacaccaaccaggtgctattggcacacctttggtt 304
Query: 108 --g-ctttggcactaaatcataatggtacaattaagattggtgttaagcatgattgtcaa 164
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagtctttggcactaaatcataatggtacaattaagattggtgttaagcatgattgtcaa 364
Query: 165 aatgagagattaaaaaaacaagggaccctagcctgtattcttatgaataggaagttggta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aatgagagattaaaaaaacaagggaccctagcctgtattcttatgaataggaagttggta 424
Query: 225 tttactcataggttcatgtgaaaatgttttgagttgacagtataaaatttatttccctta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttactcataggttcatgtgaaaatgttttgagttgacagtataaaatttatttccctta 484
Query: 285 tgtttatcataaaaacaaaatagaggagtacagaaagcgaaggaagcaatattctaatgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtttatcataaaaacaaaatagaggagtacagaaagcgaaggaagcaatattctaatgt 544
Query: 345 tatttattcccaatgacccaagtcactattatggatacatcataataatgccacctaatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatttattcccaatgacccaagtcactattatggatacatcataataatgccacctaatg 604
Query: 405 accaaggaaaacctccaaaatacagttagttcattcactgtccttactatataagttgaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 accaaggaaaacctccaaaatacagttagttcattcactgtccttactatataagttgaa 664
Query: 465 tgtctgttaagtaggtgatcttttcaacacattatcctttgcaggatgcaaatcctagtg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtctgttaagtaggtgatcttttcaacacattatcctttgcaggatgcaaatcctagtg 724
Query: 525 cttgtttattgatacagagtaaggtaggaatagatttagcatgatgtgctctgtgtgctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttgtttattgatacagagtaaggtaggaatagatttagcatgatgtgctctgtgtgctg 784
Query: 585 gataaagattgtctccagggtcaatgaggagcgctatttaggatgtttaaagctcattgg 644
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 785 gataaagattgtctccagggtcaatgaggagcgctttttaggatctttaaagctcattgg 844
Query: 645 ct 646
||
Sbjct: 845 ct 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
