BAC Information

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BAC

Clone NameMSMg01-532G12
Chromosome4 (Build37)
Map Location 20,499,052 - 20,499,708
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream gene2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532G12.T7 (MSMg01no532_g12.b1)MSMg01-532G12.TJ (MSMg01no532_g12.g1)
ACCAG600573AG600574
length742744
length of high quality
(start - end)
648 (52 - 699)658 (83 - 740)
definitionCHROMAT_FILE: MSMg01no532_g12.b1 PHD_FILE: MSMg01no532_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:19 2005CHROMAT_FILE: MSMg01no532_g12.g1 PHD_FILE: MSMg01no532_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGGATTCTCGCAAGTGTGATCATACAGAAGACTCCTA
GTAATGAGAGACACAGAACCTGAAACAACTACTCTCTATAACTAGGAAAG
CCTGCAAGTGGAGTGATTGGGACACCAACGCAGCCATAAAACCTCTGACC
TACAGTTTGTCATGTCTGCATGATGTTCTGGGATCAAAACATAGCATAAT
CATCATCAGAGAGACTTTATCAAGACACTGGTTGGGAGCAGACGCAGAGT
CCCACACCAAATATTAGGCAGAGTCTTAAATATTAGACAGAATCCTGTGG
AGGAGCCAGAGGAAGAATTGGAAAATCCAGAGGGATCAAGGATATCACAA
GAACATGGCCCACGGAGTCAATGACCAGGACTGAAGTGGGATCATGGATC
AGGGAGCCTAGGTGATTCTGACCTAGATTGGTGCTCTACATATATATTAG
GGTTGTGTAGCTCAGTGTTCTTGGGGAATTCGTAACAGTGGGAGCAGGAA
CTGTCTCTGAGTCTTTGCCTGACTTTGGGACTCCTTTTCTCCTATTGGTT
TGCCTTGTCCAGCACTGATGTAAGAATATATGCCTGGTGAGATTGTAGCT
TGTTATGCCATGTTTGGTTGATGTCCTGAGATGCTTACTCTTTTCTGAGG
GGAGATAAAAGGGGATAAGTGGGAGTGGGTTTGGGGGAGGAA
NGGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCAGTGAATTCAGA
GTTTCCAAACGTGGCACCTCCAAAATGACTTAGTTATGAACATACAGGAT
TAAAACTTGGCCTGTGCAAAAGAGCAGAGCCCACATGGAGAAAGGTTAAC
GCAACTACTGACCATTGACCTATAAAATCTATTTATAGTATACCTCTAAT
TTGTGTTATCTGTTATGTAAAGAAAACCACAGAATTGTTTAGGGAGTATT
TCTAGGGAGTCAGTACTATTAGATTTATAATTCATATCTACACAGAAACT
TGGAAGCTGATCTGATAGTATAATTATTATCTGGCCACTAATTATTTAAC
CTTCCTTATGGAACAATGGATAGAAAATTATGAGTATTAACAGACATCCT
ACACTCACTGAAGATGGTTGTTCATTGATTCTGACTCTCAGAAAGACACC
GAGGAAATGGAAGTTGGTAGACTGTTGAGAATCTATTGTCCCATGAGAGA
TCTAAACTTTTTTCTTTCTTCTCCTTCTCATCTTCCGCCCCTTCTTTTCC
TCTTCCTTCTTCTACCTCCTCCTCCCTCTTCTTTTTCCTTCTTCATTGTT
ATTTATTTATTACTATCATTATTAATTTTGAGATAACTTCTCACTATATC
ACTGTGGCTAGTTCAGAACTAACTGTGTAGACCAGGCAAGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_g12.g1 MSMg01no532_g12.g1 CHROMAT_FILE:
MSMg01no532_g12.g1 PHD_FILE: MSMg01no532_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:19 2005
         (658 letters)



>mm_chr4_20498851_20499908
          Length = 1058

 Score = 1239 bits (641), Expect = 0.0
 Identities = 653/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatgcagtgaattcagagtttccaaacgtggcacctccaaaatgacttagttatgaacat 61
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 202 aatgcagtgaattcagagtttccaaacttggcacctccaaaatgacttagttatgaacat 261

                                                                       
Query: 62  acaggattaaaacttggcctgtgcaaaagagcagagcccacatggagaaaggttaacgca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaggattaaaacttggcctgtgcaaaagagcagagcccacatggagaaaggttaacgca 321

                                                                       
Query: 122 actactgaccattgacctataaaatctatttatagtatacctctaatttgtgttatctgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actactgaccattgacctataaaatctatttatagtatacctctaatttgtgttatctgt 381

                                                                       
Query: 182 tatgtaaagaaaaccacagaattgtttagggagtatttctagggagtcagtactattaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 tatgtaaagaaaaccacagaattgtttagggagtatttctagggagttagtactattaga 441

                                                                       
Query: 242 tttataattcatatctacacagaaacttggaagctgatctgatagtataattattatctg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttataattcatatctacacagaaacttggaagctgatctgatagtataattattatctg 501

                                                                       
Query: 302 gccactaattatttaaccttccttatggaacaatggatagaaaattatgagtattaacag 361
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 502 gccactaattatttaaccttccttatggaacaatggatagacaattatgagtattaacag 561

                                                                       
Query: 362 acatcctacactcactgaagatggttgttcattgattctgactctcagaaagacaccgag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acatcctacactcactgaagatggttgttcattgattctgactctcagaaagacaccgag 621

                                                                       
Query: 422 gaaatggaagttggtagactgttgagaatctattgtcccatgagagatctaaactttttt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaaatggaagttggtagactgttgagaatctattgtcccatgagagatctaaactttttt 681

                                                                       
Query: 482 ctttcttctccttctcatcttccgccccttcttttcctcttccttcttctacctcctcct 541
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttcttctccttctcatcttctgccccttcttttcctcttccttcttctacctcctcct 741

                                                                       
Query: 542 ccctcttctttttccttcttcattgttatttatttattactatcattattaattttgaga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccctcttctttttccttcttcattgttatttatttattactatcattattaattttgaga 801

                                                                    
Query: 602 taacttctcactatatcactgtggctagttcagaactaactgtgtagaccaggcaag 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taacttctcactatatcactgtggctagttcagaactaactgtgtagaccaggcaag 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)