CCGACTGGTCACCCACAAAAGGGGGGGCGGAAACACCCCCCAGTTTTTGG
GAGGGCGGGGGGTTCTAAAAAATTTTCGGGGGGGGGGGGTGGGGAATAGG
GGGGGGTGACGTGCCCGGATACTCTTTTCTGTCTCTTCTACGAAACAATA
CCGACGCCACTTCGTCTTTCCCCCCCCCTCTGCGGGGGAAAAGAGACGAT
ACATGTGTCACCCGGGGTGGCTGGCGTACGGAAACATATGAAAGTGGTCT
GCCCCCTTTTTGTCTTCGCCCTTGTCCCCTACCCTAAGAACAACATAAGA
TAAAAACCATAATAAGACCGTTTCTCGCCGTTTTCCCCTGTACCACCTCT
ATATCACCATTTTTTCCATACTTTTTACTCTTTCCGTTATGTGCGTGTAT
CCCTATTTGGCACCCGGACCCGCGTGTTCCCCCGCATATCGCTCTTTTTC
GCGCGCCCAACGCCCCCCTAGTAGTCTCGCCTTGGCGTTTGGGTTTGATG
CCGCTTACCCGCGCTTCTTCCTCTCTTTTAATACTACGTGTGTTAAACAA
TTGGTTGGTGCCCTCATCTCTGTTGTGCTCGTGACGTGTTCTGCCTGCTC
GCCCCGACCCTTTGGCAGTTTCCTATGTCTATATGACGGAGCGACGAGTA
TGTGTTGTTCTCCCTACCAACGCCGCTTACCATTACGCCCAAGCCCTGCT
CTCTTTAGTTTTCCGCGCCGCTGCCTCCCGTCCGCTTTCTCGCATTCCAC
ACACTCTTCTATTCCCCCTTTATTCCATATACCGAGGAACTGATAGACAT
CCCCGCGCCGCTTTTTATGATATGTTTTGTTGCGCCGN

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATACTCTTAATGACCAGTGA
TGCTGGACTTCTTTTAAAGCAGCGGCTGACAGTTCACCTGTCTTTTGTCA
AGTAGCCTTTCACACATTTTTAAAGCAATTTAGTTTTAATAAAAGAGTTT
CAAAAATTATTTATAGTCTCAATACAAATCCTTTATGATCTGATTATATG
ACCTTTGCTGGTTACCTGTTTTTGGTGATATTTTCTGTAGTCTGTGTTTT
ATTTACCCTTTTTTTTGTTTTGTTTTGTTTTTGGGGAAAATTGTGTGTGT
GTGTGTGTGTGTGTGTGTCTGAGTGTGCAAGAGTGTCAGATCCCATGCAG
CTGAATTACAAACAGTTACCAGTCACTAGGTGTGGATGCTAGGAGTTAAA
GTCAGGTCCTCTGTAACAGCAGCAAATGTTCTTAACCACTGAGTCATCTC
AATGGCATGGGGGGGGGGGGCTAGACGTCCATCTTGGGTGGTATTTTTCA
TGAGGGTTCTTTCCCCTCCCCTCCCCTCCCCTCCCTTTTTTCCTTCCTCC
TCTTTCTCCTCATTCTTATTTGAATTCTTCTTAAGATATGGTCTTTTGCT
AGGACCATTAAACTTGGGTTGAGATTACAAGGTTTTGCTTTGCTTTGCTT
TGTTTTTAACCACTCTAAGCTGTTTATATAGTTCTGTGGATTGATCTCAG
ATCTTCAGGCTTGTN

Query= MSMg01no532_l04.g1 MSMg01no532_l04.g1 CHROMAT_FILE:
MSMg01no532_l04.g1 PHD_FILE: MSMg01no532_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:41 2005
         (629 letters)



>mm_chr4_53516805_53517835
          Length = 1031

 Score = 1025 bits (530), Expect = 0.0
 Identities = 614/664 (92%), Gaps = 40/664 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatactcttaatgaccagtgatgctggacttcttttaaagcagcggctgacagttcacc 60
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ccatattcttaatgaccagtgatgctggacttcttttaaagcagtggctgacagttcacc 260

                                                                       
Query: 61  tgtcttttgtcaagtagcctttcacacatttttaaagcaatttagttttaataaaagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttttgtcaagtagcctttcacacatttttaaagcaatttagttttaataaaagagt 320

                                                                       
Query: 121 ttcaaaaattatttatagtctcaatacaaatcctttatgatctgattatatgacctttgc 180
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttcaagaattatttatagtctcaatacaagtcctttatgatctgattatatgacctttgc 380

                                                                       
Query: 181 tggttacctgtttttggtgatattttctgtagtctgtgttttatttacccttttttttgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tggttacctgtttttggtgatattttctgtagtctgtgttttatttaccctttttttttt 440

                                                                       
Query: 241 t--ttgttttgtttttggggaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtctgagtgt 298
           |  |||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 441 tgtttgttttgtttttggggaaaattgtgtgtgtgtgtgtgtgtgtgt----ctgagtgt 496

                                                                       
Query: 299 gcaagagtgtcagatcccatgcagctgaattacaaacagttaccagtcactaggtgtgga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcaagagtgtcagatcccatgcagctgaattacaaacagttaccagtcactaggtgtgga 556

                                                                       
Query: 359 tgctaggagttaaagtcaggtcctctgtaacagcagcaaatgttcttaaccactgagtca 418
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 557 tgctaggagttaaagtcaggtcctctgtaacagcagcaagtgttcttaaacactgagtca 616

                                                                       
Query: 419 tctcaatggcatggggggggggggctagacgtccatcttgggtggtatttttcatgaggg 478
           ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 617 tctcagtggcatggggggtgggg-ctagacgaccatcttgggtggtatttttcatgaggg 675

                                                                       
Query: 479 ttctttcccctcccctcccctcccctccc-t------------------------ttttt 513
           ||||||||||||||||||||||||||||| |                        |||||
Sbjct: 676 ttctttcccctcccctcccctcccctcccctcccctcccctcccctcccctccccttttt 735

                                                                       
Query: 514 ccttcctcctctttctcctc---attcttatttgaattcttcttaagatatggtcttttg 570
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccttcctcctctttctcctccttattcttatttgaattcttcttaagatatggtcttttg 795

                                                                       
Query: 571 ctaggaccattaaacttgggttgagattacaaggttttg-----ctttgctttgctttgt 625
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 796 ctaggaccattaaacttgggttgagattacaaggttttgttttgctttgctttgctttgt 855

               
Query: 626 tttt 629
           ||||
Sbjct: 856 tttt 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space:   631999
Effective search space used:   631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)