Query= MSMg01no532_l20.b1 MSMg01no532_l20.b1 CHROMAT_FILE:
MSMg01no532_l20.b1 PHD_FILE: MSMg01no532_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:44 2005
(618 letters)
>mm_chr4_32389555_32390575
Length = 1021
Score = 536 bits (277), Expect = e-156
Identities = 323/345 (93%), Gaps = 17/345 (4%)
Strand = Plus / Minus
Query: 5 gaattctctgccattcttcacatgcaaagaaaatgttacctgacctggcagcagtggagc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattctctgccattcatcacatgcaaagaaaatgttacctgacctggcagcagtggagc 447
Query: 65 cattaagaatgcacagctgaactgtaaacacgccagagggtcctttacagaatctcctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cattaagaatgcacagctgaactgtaaacacgccagagggtcctttacagaatctcctca 387
Query: 125 agtcagtcttaccccctccccc-----c-cacattctctactccttcctcatcccctatg 178
||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct: 386 agtcagtct--ccccc-cccccacacacacacattctctactccttcctcatcccctatg 330
Query: 179 actgcagacacttgatccggcatgttaaaaataggtacattcttgatagaaccagagttt 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actgcagacacttgatccagcatgttaaaaataggtacattcttgatagaaccagagttt 270
Query: 239 gctgtggcgcccttcacagtcacttcacatactgacaggaaggctttaactcacacatgt 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctgtggtgcccttcacagtcacttcacatactgacaggaaggctttaactcacacatgt 210
Query: 299 gtgag----cacgcgcgcgtgcgcacacacacacacgcacacaca 339
||||| ||| ||| | ||||||||||||||| ||||||||
Sbjct: 209 gtgagtgcgcactcgc---t-cgcacacacacacacacacacaca 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 145
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1021
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1011
Effective search space: 614688
Effective search space used: 614688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_l20.g1 MSMg01no532_l20.g1 CHROMAT_FILE:
MSMg01no532_l20.g1 PHD_FILE: MSMg01no532_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:45 2005
(611 letters)
>mm_chr4_32255257_32256267
Length = 1011
Score = 1181 bits (611), Expect = 0.0
Identities = 611/611 (100%)
Strand = Plus / Plus
Query: 1 acaggttgtagagaatagataaatagattttaatatcatggaataattttcaagtgagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggttgtagagaatagataaatagattttaatatcatggaataattttcaagtgagaa 260
Query: 61 tgggtatctgaatcctaaattatttaaaaatcccttaggttattaatctataatagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtatctgaatcctaaattatttaaaaatcccttaggttattaatctataatagaaaa 320
Query: 121 atataagtgtgggaccacatactcactatgagaggtctagtatagcagtcaggagtgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataagtgtgggaccacatactcactatgagaggtctagtatagcagtcaggagtgctg 380
Query: 181 gctgagtccagtgttgctagagaaagataatagtgaactactgtcacccatgagagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagtccagtgttgctagagaaagataatagtgaactactgtcacccatgagagtttt 440
Query: 241 gaagtcagtaacatgactttctgaatgaagtggaactgaaggccttgagaagccccgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtcagtaacatgactttctgaatgaagtggaactgaaggccttgagaagccccgaca 500
Query: 301 ggtctggcctctcgctcaggtgatgcacacacagaaggcagacctcagaacacatgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctggcctctcgctcaggtgatgcacacacagaaggcagacctcagaacacatgtctg 560
Query: 361 taaagcatctcaaaactgctgccagaaccagatgtgatatgctctgcttaaagaacaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagcatctcaaaactgctgccagaaccagatgtgatatgctctgcttaaagaacaaca 620
Query: 421 aaccctagctacccctgagcgtacatgctgtctcagcaagttcttactttatttgtgttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccctagctacccctgagcgtacatgctgtctcagcaagttcttactttatttgtgttg 680
Query: 481 ttacacgtttattcacagaactatcaccccgtggtgggtgtttcaacgtgatgcccatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacacgtttattcacagaactatcaccccgtggtgggtgtttcaacgtgatgcccatgt 740
Query: 541 cttccaggtgctcccttgttccaggtctcaaagagcaggcaaggcaactatatgacagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttccaggtgctcccttgttccaggtctcaaagagcaggcaaggcaactatatgacagtg 800
Query: 601 tttgaaataca 611
|||||||||||
Sbjct: 801 tttgaaataca 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
