Query= MSMg01no532_m12.b1 MSMg01no532_m12.b1 CHROMAT_FILE:
MSMg01no532_m12.b1 PHD_FILE: MSMg01no532_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:48 2005
(528 letters)
>mm_chr4_149309044_149309971
Length = 928
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%)
Strand = Plus / Plus
Query: 7 attcattggttcttccgggcacccagctccagcttggtgaacccacacctacactaggta 66
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 207 attcattggtccttccgggcacccagctccagcttggtgaacccacacctacactaggca 266
Query: 67 cagaagaggctcaacacattccctccatgcacacgagcattctcttcaggagcaacagct 126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagaagaggctcaacatattccctccatgcacacgagcattctcttcaggagcaacagct 326
Query: 127 agtatgtatgatccttccagacagagcaatcaactgtgtgccctgcacccagccacctct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtatgtatgatccttccagacagagcaatcaactgtgtgccctgcacccagccacctct 386
Query: 187 ctatctgtcagcctgggaggccagtgtctgcgctttctatgcactgtcttctaagcaaga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 387 ctatctgtcagcctgggaggccagtgtctgcgctttctatgcactgtcttctaagaaaga 446
Query: 247 atgtgtctgcaccggatctggccacacaagccccttggcagagaaaacagacttcttgtc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgtgtctgcaccggatctggccacacaagccccttggcagagaaaacagacttcttgtc 506
Query: 307 ccaaacgtgactgtctagtctaatgtcagctttaagttaagcatcactgagttggcgtca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaaacgtgactgtctagtctaatgtcagctttaagttaagcatcactgagttggcgtca 566
Query: 367 tggcgcttgcttcctggcttcaaggctgtcacacacatcccagaatctctgggcaccagg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggcgcttgcttcctggcttcaaggctgtcacacacatcccagaatctctgggcaccagg 626
Query: 427 agacaactggccagtggctgcctcacatgaggacccacgcaaagttctctttatgggaaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 627 agacaactggccagtggctgcctcacatgaggacccacgcaaagttctctttacgggaaa 686
Query: 487 acaggctggccactggcacattcagcaccagggaaagccagg 528
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 687 acaggctggccgctggcacattcagcaccagggaaagccagg 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m12.g1 MSMg01no532_m12.g1 CHROMAT_FILE:
MSMg01no532_m12.g1 PHD_FILE: MSMg01no532_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:48 2005
(585 letters)
>mm_chr4_149485923_149486909
Length = 987
Score = 1062 bits (549), Expect = 0.0
Identities = 577/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Minus
Query: 1 tgggtaagcctgggtgacttagtgagaccctatctcaggcttgagctatgatatctaatg 60
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 787 tgggtaaacctgggtgacttagtgagaccctgtctcaggcttgagctatgatatctaatg 728
Query: 61 acttcttagggtctcttgtatgagcccacctgtatattcacagtaggcctggatgtagac 120
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atttcttagggtctcttttatgagcccacctgtatattcacagtaggcctggatgtagac 668
Query: 121 tcccaagcatatttcccaatggccacaagaatcactgcagtccaaacagaac--aaagtc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 667 tcccaagcatatttcccaatggccacaagaatcactgcagtccaaacagaactaaaagtc 608
Query: 179 tttagctgacttgttacatcccacctccaacagttcaaagaaggctgagagtgtggctca 238
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttagttgacttgttacatcccacctccaacagttcaaagaaggctgagagtgtggctca 548
Query: 239 gcacagggcacgtgcctcgcacgcactcgtgagactagattcactccccaatactacaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcacagggcacgtgcctcgcacgcactcgtgagactagattcactccccaatactacaaa 488
Query: 299 tactgctgtgagcccagctctaggaaagctgaagtgaatttgaggctagccttgattata 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 tactgctgtgagcccagctctaggaaagctgaagtgaatttgagtctagccttgattata 428
Query: 359 tggtaaggccatggggtgggggcaaccgggtggggctgcggtttacaaacctaggtttga 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 427 tggtaaggccatggggtgggggcaaccgggtggggctacggtttacaaacctaggtttga 368
Query: 419 tcctcagatattgcaaacctcagctaggagatacacagacctatgatgtctgcattccag 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcctcagatatcgcaaacctcagctaggagatacacagacctatgatgtctgcattccag 308
Query: 479 agacgtcctgtcacttcagacgaaaatatctgagaaacgttgccctctgcttttcctgaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agacgtcctgtcacttcagacgaaaatatctgagaaacgttgccctctgcttttcctgaa 248
Query: 539 tgtcaccttcaataatcctgagctgggcatggcagggcaagcggata 585
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgtcaccttcaataatcctgagctgggcatggcagggcaagcggata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 987
Length adjustment: 10
Effective length of query: 575
Effective length of database: 977
Effective search space: 561775
Effective search space used: 561775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
