ACGTTTGAGGTCGAGGCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTGTATGTACATATATGTATGAATGTGCACAT
ATGTATGAATAATAACTCAAATACATAATCATTTTCTATCTTGTATAGTT
CAGGTAGACAGATAAAATAATGGAGTCCTGGATTTGGTGAAAGACTATTG
CATTTATATTTTAACTATAAACTTGATTTTAATGTGATTTGGAACATACA
CTCCAAAAAACCTGATATTGACTCGGAGTCCTGATGACACAGTTACTTCA
CTTTTAAAGAAGGGATAACTACAATTTTTCTATTATATACTGTTTGAGAT
TTAATTAATTAATATATGTAAGGAATTCACAGCAATGTTTGGATCATAGT
AAATCATCAGTCAATACCAGTTAGAGATAGAATCTCCACTGCTATTGTTC
TTACATGTTGATGACAGGATAGTCAATAACTCTGAAGAGTACAAAGCAGG
ATATCCTCTCTGCCACATTCTGAACTGTGCATGCATTTGGAAGTTGATAT
ACTTTCTTTGGTCCTCTGTGTGTTTCCTTTGAAGTTCTAGTTGCAGAACA
CCTTCAGAAGGAAATGTTTGACTAAGACTAGAAAGAAGTATAAAACCTCA
GGAATACTTCTAAGGATTTTAATTAATAAATAGAGTGTACATAACATTGT
GTGAGTTATGTAGTA

NNACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTAAACCCAA
TTTTTTTTATTGCGTTGTCTATTTTTTTTTTTTTGGAAATTAAATTTTTG
AGTTCTTTCTTTATTTTGGATACTAGCATTCTACTAGATGTGGTTTTAGT
GAAGATTTTTTTTTCCCAATCTGTAGGTTGCCAGTTTGTCCTATTGACTA
AGTACTTTGTCCTATTGACCAAAACTTTTTAGTTTAATGAGGTTTCATTT
ATTAATTATTGATCTTAGAGCCTGAGCCATGGCAGTTCTGTTTAGGTAAT
CCACCATCCCCCTTCCAAAGAGGTCAAGGCTCTTTCCATGTTTCTCTTCT
AATAGATACAGTGTGTATATTTTTTTTCTTTTTCCAATTTTTATAAGGTA
TTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTGCCCTATGCTCTC
CCTCCCCCGCTCCTCTAGCCACCCACTCCTACTTCTTGGCCCTGGTGTTC
CCCTGTACTGGGGCATATAAAGTTTGCAAAACCAAAGAACCTCTCTTCCC
AATGGTGGTGTATAGTTTTATGTTGAAATCCTCGATACATTTGGACTTGA
GCTTTGTGCAAGGTGACAAATATGGATATATATTCACTTTTCTATATAAT
GACTCTCAGNTAGACTAGCACCCTATATTGAAGATGCTTTCTTTT

Query= MSMg01no533_a08.b1 MSMg01no533_a08.b1 CHROMAT_FILE:
MSMg01no533_a08.b1 PHD_FILE: MSMg01no533_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:07 2005
         (654 letters)



>mm_chr4_67904679_67905732
          Length = 1054

 Score =  928 bits (480), Expect = 0.0
 Identities = 486/488 (99%)
 Strand = Plus / Minus

                                                                        
Query: 167  attttaatgtgatttggaacatacactccaaaaaacctgatattgactcggagtcctgat 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 attttaatgtgatttggaacatacactccaaaaaacctgatattgactcggagtcctgat 995

                                                                        
Query: 227  gacacagttacttcacttttaaagaagggataactacaatttttctattatatactgttt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  gacacagttacttcacttttaaagaagggataactacaatttttctattatatactgttt 935

                                                                        
Query: 287  gagatttaattaattaatatatgtaaggaattcacagcaatgtttggatcatagtaaatc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  gagatttaattaattaatatatgtaaggaattcacagcaatgtttggatcatagtaaatc 875

                                                                        
Query: 347  atcagtcaataccagttagagatagaatctccactgctattgttcttacatgttgatgac 406
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  atcagtcaataccagttagcgatagaatctccactgctattgttcttacatgttgatgac 815

                                                                        
Query: 407  aggatagtcaataactctgaagagtacaaagcaggatatcctctctgccacattctgaac 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  aggatagtcaataactctgaagagtacaaagcaggatatcctctctgccacattctgaac 755

                                                                        
Query: 467  tgtgcatgcatttggaagttgatatactttctttggtcctctgtgtgtttcctttgaagt 526
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 754  tgtgcatgcatttggaagttgatatactttctttggtcctcggtgtgtttcctttgaagt 695

                                                                        
Query: 527  tctagttgcagaacaccttcagaaggaaatgtttgactaagactagaaagaagtataaaa 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  tctagttgcagaacaccttcagaaggaaatgtttgactaagactagaaagaagtataaaa 635

                                                                        
Query: 587  cctcaggaatacttctaaggattttaattaataaatagagtgtacataacattgtgtgag 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  cctcaggaatacttctaaggattttaattaataaatagagtgtacataacattgtgtgag 575

                    
Query: 647  ttatgtag 654
            ||||||||
Sbjct: 574  ttatgtag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)