BAC Information

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BAC

Clone NameMSMg01-533B05
Chromosome4 (Build37)
Map Location 74,936,650 - 74,936,954
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik
Downstream geneLOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533B05.T7 (MSMg01no533_b05.b1)MSMg01-533B05.TJ (MSMg01no533_b05.g1)
ACCAG601083AG601084
length728726
length of high quality
(start - end)		666 (56 - 721)645 (82 - 726)
definitionCHROMAT_FILE: MSMg01no533_b05.b1 PHD_FILE: MSMg01no533_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:11 2005CHROMAT_FILE: MSMg01no533_b05.g1 PHD_FILE: MSMg01no533_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCACCTTCTTGAGTTTTTTATATATGTTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGT
TGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCC
ATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGTT
TTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAA
GTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGA
TCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATT
GTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGA
AGATCAAGTGACCATAGGTGTGTGGGTTCGTTTCTGGGTCTTCAATTCTA
TTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTAC
CACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAG
AGGTTCTTTTATCCTTGAGAAGAGTTTT

NNNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAAGAAGATGTGTCT
GCAATGACAGATAAAAGCTGTATCTGCAATGACCGTTGTAAGCTACGTGT
ATCAACGACTGGATGATTAGAACTTCAATGATATGGAAAGGATGGAATGT
TGCAGAATGGGAGCCTAATTACAATTTATCTTGGACTATCTTTAGCTCAG
GAGAGATAATCTTTCCTCGTCCATTTCTGGGTTGGACTGAGACTAGCAGA
TAACAAACCTTGAAATGTATTACCTTAAGAAACTCTTATTTCCACTAACC
AAAAGGCCATGAATGCTATCAGATAACATTGGAGACCTACCATTGACCTC
CCTCTGCCTGGATAAAACTTACTTTTCTAACAAGGTATTTTGAAAATATT
ATGATTTATGATTATGTTTTGTTCTGCTGCTATAGAAACCTCATGAAACT
ACTTTTGCATTTGAACATAGAATTTTGAGGTAGCCTGAATCAGTGTTCCT
TGGTCATGGTCATTCATATCTGGCTCCACAATAAGTTATCATCTATTCTC
CCCTTTGAGGTGGGAGCTGTGTTGAAAAATTCTAACCTGGACATTGTGTA
ATTGCCACCCTACTTCACACCCTCTCCTTCATTAGATATCGGTTTAGTAT
TTTATTTAGGTTCTGCGTGTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_b05.g1 MSMg01no533_b05.g1 CHROMAT_FILE:
MSMg01no533_b05.g1 PHD_FILE: MSMg01no533_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:11 2005
         (645 letters)



>mm_chr4_74935910_74936954
          Length = 1045

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                        
Query: 341  cttttctaacaaggtattttgaaaatattatgatttatgattatgttttgttctgctgct 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 cttttctaacaaggtattttgaaaatattatgatttatgattatgttttgttctgctgct 986

                                                                        
Query: 401  atagaaacctcatgaaactacttttgcatttgaacatagaattttgaggtagcctgaatc 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  atagaaacctcatgaaactacttttgcatttgaacatagaattttgaggtagcctgaatc 926

                                                                        
Query: 461  agtgttccttggtcatggtcattcatatctggctccacaataagttatcatctattctcc 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  agtgttccttggtcatggtcattcatatctggctccacaataagttatcatctattctcc 866

                                                                        
Query: 521  cctttgaggtgggagctgtgttgaaaaattctaacctggacattgtgtaattgccaccct 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  cctttgaggtgggagctgtgttgaaaaattctaacctggacattgtgtaattgccaccct 806

                                                                        
Query: 581  acttcacaccctctccttcattagatatcggtttagtattttatttaggttctgcgtgtt 640
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 805  acttcacaccctcttcttcattagatatcggtttagtattttatttaggttctgtgtgtt 746

                 
Query: 641  ccttc 645
            |||||
Sbjct: 745  ccttc 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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