Query= MSMg01no533_b13.b1 MSMg01no533_b13.b1 CHROMAT_FILE:
MSMg01no533_b13.b1 PHD_FILE: MSMg01no533_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(194 letters)
>mm_chr4_122528704_122529306
Length = 603
Score = 304 bits (157), Expect = 3e-87
Identities = 191/203 (94%), Gaps = 11/203 (5%)
Strand = Plus / Plus
Query: 1 ttccctaac-gtttggttcccaaagcctcaa-gagcatgg-ggttcacacctgtaatgcc 57
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 201 ttccctaacagtttggttcccaaagcctcaaagagcatggtggttcacacctgtaatgcc 260
Query: 58 agaagagctcag-a-aat-attgcgagtttgag-accccactggctacagatggaggacc 113
|||||||||||| | ||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 261 agaagagctcaggagaattattgcaagtttgaggaccccactggctacagatggaggacc 320
Query: 114 ag-ccagtcaaagttacatagcaagagctttcctgataaaaca--ccaaaaaagtcaagt 170
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aggccagtcaaagttacatagcaagagctttcctgataaaacaaaccaaaaaagtcaagt 380
Query: 171 gtggtggtatatgcctggtacag 193
||||||||||||||||| |||||
Sbjct: 381 gtggtggtatatgcctg-tacag 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 603
Length adjustment: 8
Effective length of query: 186
Effective length of database: 595
Effective search space: 110670
Effective search space used: 110670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no533_b13.g1 MSMg01no533_b13.g1 CHROMAT_FILE:
MSMg01no533_b13.g1 PHD_FILE: MSMg01no533_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(601 letters)
>mm_chr4_122569160_122570160
Length = 1001
Score = 1125 bits (582), Expect = 0.0
Identities = 597/605 (98%), Gaps = 6/605 (0%)
Strand = Plus / Minus
Query: 1 ctgtcttgacttctttcaatgatgaacagcaatgtggaattgtaagccgaacaaaccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ctgtcttgacttctttcaatgatgaacagcaatgtggaattgtaagccgaacaaaccctt 669
Query: 61 tccttcccagcttgctttttggtctggtgttttgttgcaactatagaaaccccaaccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tccttcccagcttgctttttggtctggtgttttgttgcaactatagaaaccccaaccaag 609
Query: 121 acgatgtgtgaatgtttactgctatgggaaagtgggcataggattgctggggacctcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acgatgtgtgaatgtttactgctatgggaaagtgggcataggattgctggggacctcaga 549
Query: 181 cacaatgcgaaaggaaacttagaaaggttcccctaagagacagggaagctgaactcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cacaatgcgaaaggaaacttagaaaggttcccctaagagacagggaagctgaactcagct 489
Query: 241 gagatctggctttgtgacaggaagcagggtatgctttgtgggttgttgagaaaactttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagatctggctttgtgacaggaagcagggtatgctttgtgggttgttgagaaaactttcc 429
Query: 301 agtttcagacactgcctcttccctttcctctttccttaaatatgacaagacagcttcggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtttcagacactgcctcttccctttcctctttccttaaatatgacaagacagcttcggc 369
Query: 361 tgcagctctaaacttaacaactgtgagggtaagataggagtcagtggggcatggaggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgcagctctaaacttaacaactgtgagggtaagataggagtcagtggggcatggaggaga 309
Query: 421 cacatgcctttaatcccagcacttggaaggcagaggcagggtcgatttctgagttcgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cacatgcctttaatcccagcacttggaaggcagaggcagggtcgatttctgagttcgagt 249
Query: 481 ccagcctggtctacagagtgagtttcaggacagccagggctacacaaagaaaacctgtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccagcctggtctacagagtgagtttcaggacagccagggctacacaaagaaaacctgtct 189
Query: 541 tgaaaaacaa-----aaaacaaaacaaaacaaaacaaaacaaaaaaagtaacannggatg 595
||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 188 cgaaaaacaaaaaacaaaacaaaacaaaacaaaacaaaacaaaaaaagtaaca-gggatg 130
Query: 596 gaggg 600
|||||
Sbjct: 129 gaggg 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
