BAC Information

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BAC

Clone NameMSMg01-533C13
Chromosome4 (Build37)
Map Location 70,968,340 - 70,968,931
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565
Downstream geneLOC100039979, LOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533C13.T7 (MSMg01no533_c13.b1)MSMg01-533C13.TJ (MSMg01no533_c13.g1)
ACCAG601147AG601148
length778742
length of high quality
(start - end)
151 (55 - 205)592 (85 - 676)
definitionCHROMAT_FILE: MSMg01no533_c13.b1 PHD_FILE: MSMg01no533_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:17 2005CHROMAT_FILE: MSMg01no533_c13.g1 PHD_FILE: MSMg01no533_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCGCTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGATTATACTGAATGGCTGAGAAGCACCTGA
AAAAATGGTCAGCATCCTTAATCATCAAGGAAATGCAAATCAAAACAACC
CTGAGATTCCATCTCACACCAGCTAGAATGTCTAAGATCAAAAATTCGGG
TGACACCAGATGCTGGTGAATATGTGAAGAAAGAGGTACACTCCTCCATT
GTTGGTGGTATTGCAAGCTTGTACAACAACTCTTGAAATCAGTCCGGTGG
TTTCTCAGAAAATTGTACATAGTACTACTGGAGGATCCTGAAATACCTCT
CCTGGGCATATATCCTGAAGATGTTCCAACCGGTAAGAAGTACACATGCT
CCACTATGTTCATAGCAGCCTTATTTGTCATAGCCAGAAGCTGATAAGAA
CTCAGACGCCCCTCTTCAGACGAATGTATTCCGATTATGTGCTTTATTTA
CTTAACACCCTACTACCCTTCTATTTTTAATGATGAATTTACGATTTTCA
AACGGTATGCATCCTGGAACTCTATCATTCCTTAATTGATGCATACTCCT
TTTTTTTTTATCCCCCCTTCCCGCATTCAACCTTCCACCGTATTTTGTTA
TATTTATCCCTCATATTCCTCTATCAAATTTTTTAACCCCCACCAAGATT
TCCGTGTTTTGTTAATAACCCCCCCTGTCATATCTCCCCTTTCCGGATTA
TAATTAATTCCACCGGCTCTTGGTACCA
CCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAATATGTGGTATTGATCTATTGCTCT
TTAAGATGTAAAATATGGCTTCTGTTTGTGTCTGTGGAAGCCTGTAGTGT
CTTGATGTCAACTATGGAGCCTCAGATCAAGCTTGTGACTGTCTATATTC
CTCTTAGAGGCAGATGAATGAATCTACATGCCTCTTGAATTCTTTAAGAG
GAAGTGCATTTAAATAGCTACAATAGTGTATATACACAGTAATCTCAGAA
GTTCCTGATTTCCAGCAAATAGGAAACAAATGACAGGAAAGTGGTCTTCC
CACATGGACTTGAGGAGGCTAGCCACCCACTGTTTGTTATTGGTAGCAGT
TGTGTACAGAATGAGGCACACTTGTGTGAATGTGAGTACTTCTCCAATTA
ACATCAGTCTGAAAGTGAACAAACATAATAAACAGCTGTGCCCAGGCTGG
TGGAAGACGACACATGTTTAACACTTGTGGCCCTCCTCTGATCATTTTAC
ATGGGAAAGCTTGGCTTCATCTGAACAGTGTCTCCTATAATTAGCAGCCT
ATAAATAGACCACAGGGAAAAGGATTTCGTTTTTGAAAGTAAAAGGTGAT
GAATGACGCACTCCCCAAGAATTCAGGTGTTTGACATACACAGTCATCCT
GTGAGCATTTACTGTTGGGGAGGCAGTCTACTTTCAGCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_c13.g1 MSMg01no533_c13.g1 CHROMAT_FILE:
MSMg01no533_c13.g1 PHD_FILE: MSMg01no533_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:18 2005
         (592 letters)



>mm_chr4_70968140_70969131
          Length = 992

 Score = 1122 bits (580), Expect = 0.0
 Identities = 589/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatctattgctctttaagatgtaaaatatggcttctgtttgtgtctgtggaagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 attgatctattgctctttaagatgtaaaatatggcttctgtttgtgtctgtggaagcctg 733

                                                                       
Query: 61  tagtgtcttgatgtcaactatggagcctcagatcaagcttgtgactgtctatattcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tagtgtcttgatgtcaactatggagcctcagatcaagcttgtgactgtctatattcctct 673

                                                                       
Query: 121 tagaggcagatgaatgaatctacatgcctcttgaattctttaagaggaagtgcatttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tagaggcagatgaatgaatctacatgcctcttgaattctttaagaggaagtgcatttaaa 613

                                                                       
Query: 181 tagctacaatagtgtatatacacagtaatctcagaagttcctgatttccagcaaatagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tagctacaatagtgtatatacacagtaatctcagaagttcctgatttccagcaaatagga 553

                                                                       
Query: 241 aacaaatgacaggaaagtggtcttcccacatggacttgaggaggctagccacccactgtt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aacaaatgacaggaaagtgatcttcccacatggacttgaggaggctagccacccactgtt 493

                                                                       
Query: 301 tgttattggtagcagttgtgtacagaatgaggcacacttgtgtgaatgtgagtacttctc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 492 tgttattggtagcagttgtgtacagaacgaggcacacttgtgtgaatgtgagtacttctc 433

                                                                       
Query: 361 caattaacatcagtctgaaagtgaacaaacataataaacagctgtgcccaggctggtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caattaacatcagtctgaaagtgaacaaacataataaacagctgtgcccaggctggtgga 373

                                                                       
Query: 421 agacgacacatgtttaacacttgtggccctcctctgatcattttacatgggaaagcttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agacgacacatgtttaacacttgtggccctcctctgatcattttacatgggaaagcttgg 313

                                                                       
Query: 481 cttcatctgaacagtgtctcctataattagcagcctataaatagaccacagggaaaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttcatctgaacagtgtctcctataattagcagcctataaatagaccacagggaaaagga 253

                                                               
Query: 541 tttcgtttttgaaagtaaaaggtgatgaatgacgcactccccaagaattcag 592
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttcgtttttgaaagaaaaaggtgatgaatgacgcactccccaagaattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)