BAC Information

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BAC

Clone NameMSMg01-533I07
Chromosome4 (Build37)
Map Location 149,213,249 - 149,213,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33
Downstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533I07.T7 (MSMg01no533_i07.b1)MSMg01-533I07.TJ (MSMg01no533_i07.g1)
ACCAG601421AG601422
length759733
length of high quality
(start - end)		54 (131 - 184)456 (78 - 533)
definitionCHROMAT_FILE: MSMg01no533_i07.b1 PHD_FILE: MSMg01no533_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:45 2005CHROMAT_FILE: MSMg01no533_i07.g1 PHD_FILE: MSMg01no533_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCGCTATTTATTCTATTATTGCGGCGCTAATACTACTACTATATTTTCA
GGATCCGCGGTAATCCTCAATGGTTCGATCCAGGGCCTCCCTGAGGGGGA
AGATTGGAGGTCATGGCACACCAGACTGCAACCCTTTACTAGAAGGGGGT
CTGCCTCTCTTTCTCTGAGTCTAGCCTTTTGGCGAGCTTTACTCAACAGA
ATGCAAAGTATATAGTCCCAGATCTCATGTTTAAAATATCTCTCTGATCT
GGATCCTGTCCCCATCACCCAGGTGCATCTTGGGGAAAGTCTGACTACCA
GTCTGCTCTTTCCTTCGCTTCTAATAGAGCTTTAGCCGACCTCTTGTTCT
GGCTATTCAGTGGACTCCATCTTAGACCCCCCACGCATGCCAGAATTCCC
CCATGACTTCAGTTGTTCCAACCGCGGAATGTCTAGTATTTCTCATATTC
TTATTCCTCTATTTTTACCTCTCTAATTCTATCTGCGTCCTTTCTTCCTA
TCACCGCCATATCTGCATTCCAAGTTCCTTTATTCCTCTCCCCTTTTTAT
TNTTTTCCCTCTTCCACCATTTCATCCCTCTAAAATACTTCCTCCTCTTT
TTGTTTTCACCACTTCACACTTCCCCTTTCCCCTTACTCTTCTCACCAAT
TCCCCCTTTTCCCCCTACTTTTTATTCGCCCCCTCTTTCTTTTGTTGTTT
GTATATCCTTCACTTCTATCCCACATTGGTTTATTTTTTCTTCCACCTCA
TATTTTCTN

NAACGATGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACCAGGCCACCCTCCTCTG
TCTGGTACCAATGCGGAGTAAGCCCCATCTGTGTTGGCTTAAAGGCCTTA
ATTGCCGTCTCCTACTTAACAACTAACAGTGACCAAAAAAGAAAACTACC
TCCGAAGAGAAGGTGCCCCACTGTCGGGATGGCAGCTTGCGTCAGTCTGA
TTGAGAGTGGTACCCAACAGCTTTCTGCCAGGGCCATGTCTTGGGAGGCT
GTTTTTGTTTTTGTTTTTTTGGAGGAGGGGGTCTTTTATCTTGTTTTAAT
CTCTGGCAGGTTTGGGTGTTTGTTTTATGACAGTCTCATGTAACCCAGGC
TGGCCTCAAACTTGCTATGTCTTAGGATAACCTTGAACTCGTGCGCCTCC
TGAGTACAGCTGCCTGGATTTCAAGCATGCACCATCGTGCCTGACCCCCA
GGGAGTCTCTTAATCATGCAGAGTCCCATGCTGCCCTCGAAGGGGCTGGG
GCTGGTTTTTAGACCTAAATTGAAATGGAAATACAGGAGAGAGGTCAGTT
CCTGTTATACTGATATTGAGGATGTTGCCAAACTCAAAAATTGCTCATTT
TCCCAAATAAAAGTCAGTTTTTTCTATGGAGATCATTTGTCTCTCCGGTT
CGAATGTTGAAAGCTACCTTTTGGTGTCCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_i07.g1 MSMg01no533_i07.g1 CHROMAT_FILE:
MSMg01no533_i07.g1 PHD_FILE: MSMg01no533_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:45 2005
         (456 letters)



>mm_chr4_149213214_149214069
          Length = 856

 Score =  866 bits (448), Expect = 0.0
 Identities = 454/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaccaggccaccctcctctgtctggtaccaatgcggagtaagccccatctgtgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttcaccaggccaccctcctctgtctggtaccaatgcggagtaagccccatctgtgttgg 432

                                                                       
Query: 61  cttaaaggccttaattgccgtctcctacttaacaactaacagtgaccaaaaaagaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttaaaggccttaattgccgtctcctacttaacaactaacagtgaccaaaaaagaaaact 372

                                                                       
Query: 121 acctccgaagagaaggtgccccactgtcgggatggcagcttgcgtcagtctgattgagag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acctcctaagagaaggtgccccactgtcgggatggcagcttgcgtcagtctgattgagag 312

                                                                       
Query: 181 tggtacccaacagctttctgccagggccatgtcttgggaggctgtttttgtttttgtttt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 tggtacccaacagctttctgccagggccatgtcttgagaggctgtttttgtttttgtttt 252

                                                                       
Query: 241 tttggaggagggggtcttttatcttgttttaatctctggcaggtttgggtgtttgtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttggaggagggggtcttttatcttgttttaatctctggcaggtttgggtgtttgtttta 192

                                                                       
Query: 301 tgacagtctcatgtaacccaggctggcctcaaacttgctatgtcttaggataaccttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgacagtctcatgtaacccaggctggcctcaaacttgctatgtcttaggataaccttgaa 132

                                                                       
Query: 361 ctcgtgcgcctcctgagtacagctgcctggatttcaagcatgcaccatcgtgcctgaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctcgtgcgcctcctgagtacagctgcctggatttcaagcatgcaccatcgtgcctgaccc 72

                                               
Query: 421 ccagggagtctcttaatcatgcagagtcccatgctg 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 71  ccagggagtctcttaatcatgcagagtcccatgctg 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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