Query= MSMg01no533_i21.b1 MSMg01no533_i21.b1 CHROMAT_FILE:
MSMg01no533_i21.b1 PHD_FILE: MSMg01no533_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:47 2005
(604 letters)
>mm_chr4_47876906_47877909
Length = 1004
Score = 1110 bits (574), Expect = 0.0
Identities = 592/598 (98%), Gaps = 2/598 (0%)
Strand = Plus / Plus
Query: 8 gaattcct-taagttcacagatcatgttacaatgctatactgtgtgtacacccccatcac 66
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaatt-ctgtaagttcagagatcatgttacaatgctatactgtgtgtacacccccatcac 266
Query: 67 atagccagtttggcatcatacccttttctctttcataaagccatgaaagccagcaagtca 126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 atagccagtttggcatcatacccttttctctttcataaagccatgaaagcaagcaagtca 326
Query: 127 atcctgaatgtgtaacttgatggtaaggtggtatcagaaaaaaactaaggatgccttgat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcctgaatgtgtaacttgatggtaaggtggtatcagaaaaaaactaaggatgccttgat 386
Query: 187 tccttaacattttctattcaaaatctttcattctcaaatcatctcaactgcctccagctc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccttaacattttctattcaaaatctttcattctcaaatcatctcaactgcctccagctc 446
Query: 247 catacctacttgggactcacagagtggctctgtcagtgactagcagacacggactctgct 306
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 447 catacctacttgggactcacagagtggctctgtcagtgactagcagacacagactctgct 506
Query: 307 gtgtggcacctgtccacatttatattcactgtcactgttttgaaaagctggaggactatt 366
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 gtgtggcacctgtccacatttatattcactgtcgctgttttgaaaagctggaggactatt 566
Query: 367 gtatctgagtcttttggaatggcaatctccaagtatgaagaaagtataagatacatctgt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtatctgagtcttttggaatggcaatctccaagtatgaagaaagtataagatacatctgt 626
Query: 427 gggaagacattcactggcttttctgacatgggggagtttagagccacagctcacttcatg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gggaagacattcactggcttttctgacatgggggagtttagagccacagctcacttcatg 686
Query: 487 aaacctagaatcgttcctagtttctcttcttcatagtgctctggagaccagtcctgtttt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaacctagaatcgttcctagtttctcttcttcatagtgctctggagaccagtcctgtttt 746
Query: 547 gcaatagtgtgggagggaaagtgagtcctcaaagcacatgagcctctagaaaacacct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gcaatagtgtgggagggaaagtgagtcctcaaagcacatgagcctctagaaaacacct 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_i21.g1 MSMg01no533_i21.g1 CHROMAT_FILE:
MSMg01no533_i21.g1 PHD_FILE: MSMg01no533_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:47 2005
(602 letters)
>mm_chr4_48040403_48041404
Length = 1002
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%)
Strand = Plus / Minus
Query: 1 actacatagtccaagctggcctcgaactaaagaagatccactttcctgtgcatctggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 actacatagtccaagctggcctcgaactaaagaagatccactttcctgtgcatctggagt 837
Query: 61 gctaggattaaaggcatatgcccccacccccagcctcaatttattctttttagatgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gctaggattaaaggcatatgcccccacccccagcctcaatttattctttttagatgttat 777
Query: 121 attcttatcctcaagaaagttgaggcttgaagaagagaaacctttccatactttttaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attcttatcctcaagaaagttgaggcttgaagaagagaaacctttccatactttttaata 717
Query: 181 tgtacggtagtatttcttattgttacagtaatagtaattataagaacatacaaacgcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgtacggtagtatttcttattgttacagtaatagtaattataagaacatacaaacgcata 657
Query: 241 ctttatgtggacatggccgaggggagattgtggcattctgacaagggtttttgtggagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctttatgtggacatggccgaggggagattgtggcattctgacaagggtttttgtggagca 597
Query: 301 ggagtgctcagcttgtgcctgtaccccatggaggtacttggtctctcaggcaagaggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggagtgctcagcttgtgcctgtaccccatggaggtacttggtctctcaggcaagaggaac 537
Query: 361 tagaggaagtaggtctggaaggaggtcagggtcagctggtggggaaacccaggaactgga 420
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taaaggaactaggtctggaaggaggtcagggtcagctggtggggaaacccaggaactgga 477
Query: 421 ggtagaggtaagttagcaaggaactcactcagtagagtaagtgaggccagtgagagtgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggtagaggtaagttagcaaggaactcactcagtagagtaagtgaggccagtgagagtgag 417
Query: 481 aggaggactctgctgggcgagttcacagataatgcagaacttattcaaaatggcttgttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aggaggactctgctgggcgagttcacagataatgcagaacttattcaaaatggcttgttc 357
Query: 541 gtgtctatggaagaagtaaactgattgggcgactcctactgaatcagtgcaactgtagta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtgtctatggaagaagtaaactgattgggcgactcctactgaatcagtgcaactgtagta 297
Query: 601 ag 602
||
Sbjct: 296 ag 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
