TCCCCTTTCTCCCCCTCTTTTGAGTGCGCTATATGACTCACTATATTTCG
AGGATCCGCGGAATTCAGCTTCATCGTTGACAGCCAGTTGCATCTAGATG
CATGACCCACAACCTGTCTTACTTGGGTACCGTTTGCCTTTGATTAGTTG
TCTGAGACCTTTGCAACCTGAAGACTTGAAGCCACAAGGCAAAAGAGAAG
TGCTTTCATCTAGGATAGTTTTTAGAACTTTAGCCTTGTCAATCATGGGC
TGACAGAAGAGACTGGGTGTGGCTCTTGGGGTGCCCTGACTTGAGTAAAG
CTCCCATGATGCAGTTCTTCTGTAGGACTCAATGCACCTCTGCATGCTTA
GCAAATGAACCTGCTGAAGTTTTTTTTTTTTTAATATTCTGCATCTGAAT
GCTGAAGAGTGTCTGCACGTTAGAATTAATGTCAGTCTGAGACATGATAA
ATATGATTTTAGTGTTTCTTCTGAGAAGCTTCACTGGGGTACCATTTTAT
TGTCTACTGTCTCAAAGGCTTAAATCTCTTTTTGCTGCCTTCAGTTCATA
CGATGAAAACATGTGAAATCACTGGGATTTATATAGGCAGATTTGGCAGC
TCCTTACTTTTTTTTTTTTTAACTTGGACCGTCAGATATTAATCAACATT
ACAGCACTCTTTCCCAGAATATGTTAGAATGTGCATGTGTTTGGGGAGAC
CACACANTACTTCCATTATATTTTTGTTTGCAAGCGTGAATTGA

CTTCCCTTTTCTATAATACTATGTCTGGNGGCCGTCTTTTCCTATACXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGCAACCAGCTGGTT
ATTTACAAAAGAGAATTGTGAGGCATGCTGGTTATGACTGGTCTGGGTAT
CCAGAACTGGATGACACATAAATTGCTTTCCAAACAGTCTCGTTGCGCGT
ATGAAGGCTCTGTGAAGGTTACAGCATTTCTTACAGCACACAGGATGTTC
CATACTGATGGTCAAGTCCAAGGACGGCTAACAAATGCCACCGTGTTGTG
CTGTCTGACCTCAGCGATGTCACTACTTACCTGGTCGCTATCATTCCTCC
GTCTGACACATATTGTTAAATCTCTGAAGGTGTTAGCCTTCTCTTGGTTC
GGCATGTGAACATTATACTATTTGCCAGCTCTGTATTTGGTCAATTCACT
TACCTTTCTTCTGAAGCACATATTTCTCATTAATGATGCTGCTGTCTTTT
CTTCTTGTTGCCTTGCATGGCTTGCTTATGACGTGTGTGCGTGTGATCAC
TTCCCCATGCTCTGCCTGCTTTTTTGTTTTTGTTTGTTCGCCGTGCGTTT
GCGTGTTCCTATCGCTTTTATTTCTCCAGATCTTTTTTTTTTTTTGCTTT
TATATTCTTTTCTTTTTTTTATTCGCCATTTTTGTTCCTGTTACCCTATA
TTCGCTTTTCTTTCCTTTTTTTCTTCCGTCTT

Query= MSMg01no533_j12.b1 MSMg01no533_j12.b1 CHROMAT_FILE:
MSMg01no533_j12.b1 PHD_FILE: MSMg01no533_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:50 2005
         (565 letters)



>mm_chr4_47856995_47857959
          Length = 965

 Score =  965 bits (499), Expect = 0.0
 Identities = 517/529 (97%), Gaps = 10/529 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagcttcatcgttgacagccagttgcatctagatgcatgacccacaacctgtctt 67
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaatttagcttcatcgttgacagccagttgcatctagatgcatgacccacaacctgtctt 470

                                                                       
Query: 68  acttgggtaccgtttgcctttgattagttgtctgagacctttgcaacctgaagacttgaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acttgggtaccgtttgcctttgattagttgtctgagacctttgcaacctgaagacttgaa 410

                                                                       
Query: 128 gccacaaggcaaaagagaagtgctttcatctaggatagtttttagaactttagccttgtc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gccacaaggcaaaagagaagtgctttcatctaggatagtttttagaactttagccttgtc 350

                                                                       
Query: 188 aatcatgggctgacagaagagactgggtgtggctcttggggtgccctgacttgagtaaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aatcatgggctgacagaagagactgggtgtggctcttggggtgccctgacttgagtaaag 290

                                                                       
Query: 248 ctcccatgatgcagttcttctgtaggactcaatgcacctctgcatgcttagcaaatgaac 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctcccatgatgcagttcttctgtaggactcaatgcacctctgcatgcttagcaaatgaac 230

                                                                       
Query: 308 ctgctgaag----------tttttttttttttaatattctgcatctgaatgctgaagagt 357
           |||||||||          |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 229 ctgctgaagtttttttttttttttttttttttaatatcctgcatctgaatgctgaagagt 170

                                                                       
Query: 358 gtctgcacgttagaattaatgtcagtctgagacatgataaatatgattttagtgtttctt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gtctgcacgttagaattaatgtcagtctgagacatgataaatatgattttagtgtttctt 110

                                                                       
Query: 418 ctgagaagcttcactggggtaccattttattgtctactgtctcaaaggcttaaatctctt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctgagaagcttcactggggtaccattttattgtctactgtctcaaaggcttaaatctctt 50

                                                            
Query: 478 tttgctgccttcagttcatacgatgaaaacatgtgaaatcactgggatt 526
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tttgctgccttcagttcatacgatgaaaacatgtgaaatcactgggatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)