BAC Information

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BAC

Clone NameMSMg01-533J13
Chromosome4 (Build37)
Map Location 61,794,729 - 61,795,352
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345
Downstream geneOTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533J13.T7 (MSMg01no533_j13.b1)MSMg01-533J13.TJ (MSMg01no533_j13.g1)
ACCAG601481AG601482
length724744
length of high quality
(start - end)
645 (78 - 722)624 (80 - 703)
definitionCHROMAT_FILE: MSMg01no533_j13.b1 PHD_FILE: MSMg01no533_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:50 2005CHROMAT_FILE: MSMg01no533_j13.g1 PHD_FILE: MSMg01no533_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTTCTTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAG
GATCCGCGGAATTCCACACCCCTAAGCCCCATACCCCATAAAAGCCCCTG
GCTTTCAAGCCTCGGGGCCGACATCCGTTATCTCCTGTGTGGGATGCATG
TCGGCCCGGAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGG
GTCTTCGTGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGAAGGGG
TCCCCGAAAGGGGGTCTTACAGTTGTCATTTTAAAAAACGTGTCATGAAC
CAGCCCAGGAAATCAGGCCCCTAAAGATACTTCTAAATTGGGATAATATT
TTATATAATTCTTATCCTAGAAAGTAGACTTATAAGAGGTAAGATTAAAA
ACAATGTCTCTTCAATGAAGCATTAAAAGTTGAACTGTCATGCATTCATA
TATAAGAATTGTTTGCCAAACTTTGTAAAGTGAAAGTAATCCTTTCGGTG
TTGATTTTAAAGAGAATGGACTGTTTAAAATTGGGTTTTGTTTTCCAAAA
CTTATAGTTATGCTCTAGTATTAAATAAAAACTTAAAAATTATGGTTAAA
ATTGCCAGTGTTCCATTTGCTGCAGGTTGCAGTTTGATTGGAAGCTCAGG
GTTCTTAACTCACCCATATTTTGTTATTACAATAATTACAACAGTAATAA
ATATTAAAACCAGATGGGGTCAGN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTACACCTGTGCACATT
ACTTGTTTACCAGTTAGGCACAGTGGAAGCCGGCGCCATCTTGTAATGGC
GATTGCTCACAGCTCTCCACAGATAATGAAGTAGAACGCGAGCCAGAAGA
ACAATTATCTGTCCTTATTCAACAGACAGAGTTCCACAGACTACATTTTA
AGGACTTAAAAGTGCTTAACTCTGTGGTTAGAACTTATGGCCCATCTGCC
CCTTATACTCTTTTGCTCCTAGAACTCTCCTGGGAGGCAGATATATGCTC
CCTAGTGAGTGGATCAAAGTAATCCAAAATGTGTTGGATTTCACGTGGGC
AATTTCTCTCATGGAAAGCTGATTTCCTCGATTGGTGCCAGACTATTGCA
GTGGCTAATCAGAAAAAACCCCGAGCGCCATCTACTGGCTGGAACTTTGA
AAAGCTTTCTGGTCAAGGTCAATACTCGGCGAAAGCCAGGCAGAAACATT
TCCCTGTAGGTCTTTTGGCTCAAACTGCTAATGCAGCCCTAGGAGCTTGG
TGTGCTATTCCTATGAAAGGATCCGTTATTATGCCTTTAAAAAAATTATT
CAAGGAGCCCAGGAGGACTATAGTGATTTGTGAGTCATTTATTTGAGGCT
GCAGAGAGGACCCTATGTCATGAAGATGCAGACTANTAACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_j13.g1 MSMg01no533_j13.g1 CHROMAT_FILE:
MSMg01no533_j13.g1 PHD_FILE: MSMg01no533_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:50 2005
         (624 letters)



>mm_chr4_61794437_61795460
          Length = 1024

 Score = 1207 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttacacctgtgcacattacttgtttaccagttaggcacagtggaagccggcgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 actcttacacctgtgcacattacttgtttaccagttaggcacagtggaagccggcgccat 857

                                                                       
Query: 61  cttgtaatggcgattgctcacagctctccacagataatgaagtagaacgcgagccagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cttgtaatggcgattgctcacagctctccacagataatgaagtagaacgcgagccagaag 797

                                                                       
Query: 121 aacaattatctgtccttattcaacagacagagttccacagactacattttaaggacttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aacaattatctgtccttattcaacagacagagttccacagactacattttaaggacttaa 737

                                                                       
Query: 181 aagtgcttaactctgtggttagaacttatggcccatctgccccttatactcttttgctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aagtgcttaactctgtggttagaacttatggcccatctgccccttatactcttttgctcc 677

                                                                       
Query: 241 tagaactctcctgggaggcagatatatgctccctagtgagtggatcaaagtaatccaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagaactctcctgggaggcagatatatgctccctagtgagtggatcaaagtaatccaaaa 617

                                                                       
Query: 301 tgtgttggatttcacgtgggcaatttctctcatggaaagctgatttcctcgattggtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtgttggatttcacgtgggcaatttctctcatggaaagctgatttcctcgattggtgcc 557

                                                                       
Query: 361 agactattgcagtggctaatcagaaaaaaccccgagcgccatctactggctggaactttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agactattgcagtggctaatcagaaaaaaccccgagcgccatctactggctggaactttg 497

                                                                       
Query: 421 aaaagctttctggtcaaggtcaatactcggcgaaagccaggcagaaacatttccctgtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaagctttctggtcaaggtcaatactcggcgaaagccaggcagaaacatttccctgtag 437

                                                                       
Query: 481 gtcttttggctcaaactgctaatgcagccctaggagcttggtgtgctattcctatgaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtcttttggctcaaactgctaatgcagccctaggagcttggtgtgctattcctatgaaag 377

                                                                       
Query: 541 gatccgttattatgcctttaaaaaaattattcaaggagcccaggaggactatagtgattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatccgttattatgcctttaaaaaaattattcaaggagcccaggaggactatagtgattt 317

                                   
Query: 601 gtgagtcatttatttgaggctgca 624
           ||||||||||||||||||||||||
Sbjct: 316 gtgagtcatttatttgaggctgca 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)