BAC Information

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BAC

Clone NameMSMg01-533P05
Chromosome4 (Build37)
Map Location 110,667,013 - 110,667,357
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533P05.T7 (MSMg01no533_p05.b1)MSMg01-533P05.TJ (MSMg01no533_p05.g1)
ACCAG601752AG601753
length714750
length of high quality
(start - end)
346 (56 - 401)370 (83 - 452)
definitionCHROMAT_FILE: MSMg01no533_p05.b1 PHD_FILE: MSMg01no533_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:17 2005CHROMAT_FILE: MSMg01no533_p05.g1 PHD_FILE: MSMg01no533_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCTCTTTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTGCATAAAGCTGGAGGAGTACAGAGGAGGAGTC
TTGAATTCTGCATAGAGTATTAGAAGGAACATTGAATGGAAACAATTTAC
TAATTAACTAACAATTAACTTATAATTAAAATTCTTAAAAATGTAGGTAG
ATGTGGGGGGGGCAGGGAGCAGTGTGAAACTACCTTACTCTTAGATAAGC
AAAATGATATTTTGTGTTTTTTCCTTTCTTTTAAGTTTTAAGGATAGATT
CTTTAATAGGTTCATATATGTATATAATGCTTTGATTGTACCCCTGACTT
CTCACCCTTTCTCTTCCCAGTTTCTCTATGCACCTTCTCAATGAATCTAT
CTCTTACCTTTTATGTCTTTTAAGAATATTGAGAACTATTGTGTGAGTTC
CTTTGTGAAAGTGGTTACCTCCCCCAGAATGATGCCCCCCCGGGCCCATC
CATTTTGGCTAGGAATTTTCAAAAATCCCTCCTTTTTTAAATTTCGGAAA
AATAAAAGTTTTTCTCGGGAAAAAAGGGCGCAATTCCCCCCCCTCTTTTT
TTTCAAAAAAAGGGGGTTTCCCCTATTATCCTCCCCCCCCAAGAGGGGGG
AGAATCTCTCCTTTTTTAAACCACCGGGTGGGGGGCCTTCAACCCCCCTT
AAAAAAACTCGCGG
NNNNCCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTAC
AAAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA
AAACAAAAACCAAACAAACAAACAAAACATATAAACCAACCAGATCCCCC
AGAACTCCCAGGGACTAAACCACCAATAAAAGAGTACACATTAGAGGGAT
CAAAGGCTCCAGCTGCATGTGTAGCAGAGGGTGGCCTGGTTGGACATCAA
TGGGAGGAGATGCCCTTGGTCCTGGGAAGGCTCCATGTCCCAGGGTAGGG
GGATGCCAGGGCAGAGAAGTGGGAGTCAGTGGGAGGAGGGGGGAGCATCC
TCATAGAAGCAGGGGGAGGGGGAAGTGGGGAAGGGCTTTGGGGAGGGGAN
NNNNNNNNNGGGTNNNNNNTNTGNNNNGTNNNTNNNTNNNNGTNTTTNTT
TTTTTTTTTTGTGTTTTGTGGTTTGGGTGTNTTGGTTTTTGTTTTTTTTT
TTTTGGTTTGGTGTTTGTTTTTTTTTGTTGGGTTGTTNNTGTTTTTTGTT
TTGGGTGATTTTGTTTTTTTTGTTTNTTTTTTGGTTTTTTTTTTGGTTTG
GTTTTGTGTTGTGTTTTTTTTTTTTTTTTTTGGTTTTTTTTGTTTTGTTG
GGTTGTTGTGTGTTTTTTTGTTNTTTTTTTTTTTTTTTTTTTTTTNTTGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_p05.b1 MSMg01no533_p05.b1 CHROMAT_FILE:
MSMg01no533_p05.b1 PHD_FILE: MSMg01no533_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:17 2005
         (346 letters)



>mm_chr4_110666809_110667557
          Length = 749

 Score =  582 bits (301), Expect = e-170
 Identities = 333/345 (96%), Gaps = 3/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgcataaagctggaggagtacagaggaggagtcttgaattctgcatagagta 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattctctgcagaaggctggaggagtacagaggaggagtcttgaattctgcatagagta 490

                                                                       
Query: 65  ttagaaggaacattgaatggaaacaatttactaattaactaacaattaacttataattaa 124
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttagaaagaacattgaatgaaaacaatttactaattaactaacaattaacttataattaa 430

                                                                       
Query: 125 aattcttaaaaatgtaggtagatgtggggg---gggcagggagcagtgtgaaactacctt 181
           ||||||||||||||| ||||||||||||||   |||||| |||| |||||||||||||||
Sbjct: 429 aattcttaaaaatgtgggtagatgtgggggggcgggcagagagcggtgtgaaactacctt 370

                                                                       
Query: 182 actcttagataagcaaaatgatattttgtgttttttcctttcttttaagttttaaggata 241
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actcttagataagcaaaatgacattttgtgttttttcctttcttttaagttttaaggata 310

                                                                       
Query: 242 gattctttaataggttcatatatgtatataatgctttgattgtacccctgacttctcacc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gattctttaataggttcatatatgtatataatgctttgattgtacccctgacttctcacc 250

                                                        
Query: 302 ctttctcttcccagtttctctatgcaccttctcaatgaatctatc 346
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctttttcttcccagtttctctatgcaccttctcaatgaatctatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 749
Length adjustment: 9
Effective length of query: 337
Effective length of database: 740
Effective search space:   249380
Effective search space used:   249380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)