Query= MSMg01no533_p11.b1 MSMg01no533_p11.b1 CHROMAT_FILE:
MSMg01no533_p11.b1 PHD_FILE: MSMg01no533_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:18 2005
(592 letters)
>mm_chr4_147462335_147463321
Length = 987
Score = 1110 bits (574), Expect = 0.0
Identities = 586/592 (98%), Gaps = 5/592 (0%)
Strand = Plus / Plus
Query: 1 taaagataaaaagtgagggttggagaggattccgtgattaagagcacatgttactacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagataaaaagtgagggttggagaggattccgtgattaagagcacatgttactacttt 260
Query: 61 ttctaggcttgggttcccagaacccacatgccggctcacaatcatgtacttgtgatacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaggcttgggttcccagaacccacatgccggctcacaatcatgtacttgtgatacaa 320
Query: 121 ccaccctcttttgtcctccgcaggctccagacacaagtgcatatacacacacaggcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccctcttttgtcctccgcaggctccagacacaagtgcatatacacacacaggcaggt 380
Query: 181 gagacattcgtatacacaagacaaaaataaataaatctgaaaaaaaaaatcgaagctctg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gagacattcgtatacacaagacaaaaataaataaatctgaaaaaaaaa-tcgaagctctg 439
Query: 241 ttcttactgtattaaattttccttccaagcttattggatttcaagagaatttcatagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcttactgtattaaattttccttccaagcttattggatttcaagagaatttcatagaat 499
Query: 301 acattaaaaaggaagaaaggaaggaaggggaagtcgaggcaaagatataatgatatcaaa 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acattaaaaag----aaaggaaggaaggggaagtcgaggcaaagatataatgatatcaaa 555
Query: 361 gcctgcctggcttataaagtaagaccgtgtttatgtcttattgatctacttagtggggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcctgcctggcttataaagtaagaccgtgtttatgtcttattgatctacttagtggggtg 615
Query: 421 ggtggatgcatgccacaacatgagtggggaggcgagagtgtggatggttttccttccatc 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 616 ggtggatgcatgccacaacatgagtggggaggcgagagtgtggatggttctccttccatc 675
Query: 481 ctgggttctgaagccagggtaaggaaagggagacaggacctgaagtcaagaaaggggctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctgggttctgaagccagggtaaggaaagggagacaggacctgaagtcaagaaaggggctt 735
Query: 541 tccagctgatggctgaatagcccccaccacaagggaaggagaggctggagga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tccagctgatggctgaatagcccccaccacaagggaaggagaggctggagga 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 987
Length adjustment: 10
Effective length of query: 582
Effective length of database: 977
Effective search space: 568614
Effective search space used: 568614
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_p11.g1 MSMg01no533_p11.g1 CHROMAT_FILE:
MSMg01no533_p11.g1 PHD_FILE: MSMg01no533_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:18 2005
(653 letters)
>mm_chr4_147605418_147606470
Length = 1053
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%)
Strand = Plus / Minus
Query: 1 agagatcttttctccaaagaataagtgagggcggggtagcgggaggagaagcagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agagatcttttctccaaagaataagtgagggcggggtagcgggaggagaagcagcagcag 436
Query: 61 agagggaaaaaggaggctagaggagaggaagggggttgggaggccagaaaccctgtgaag 120
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agagggataaaggaggccagaggagaggaagggggttgggaggccagaaaccctgtgaag 376
Query: 121 aaaaggaatgagaagagaaagggagacagacatatggcacacagagatgtggagacacag 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 375 aaaaggaatgagaagagaaagggagacagacatatggcacacagagacgtggagacacag 316
Query: 181 aagaggcagagacagcaggaagtacagagacatgcagccacagatatacacatctatgaa 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 aagaggcagagacagcaggaagtacagaaacatgcagccacagatatacacatctatgaa 256
Query: 241 cagacacactctatatagatatacacacctatggacaagacacatagattggtacttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagacacactctatatagatatacacacctatggacaagacacatagattggtacttctc 196
Query: 301 aaccttcccaatgctgtgaccctgtaatacagttcctcatgttgtggtgacccccaaaca 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 195 aaccttcccaatgctgtgaccctgtaatacagttccccatgttgtggtgacccccaaaca 136
Query: 361 taagattatttcattgtcacttcataactataattttgatactgttgtgaatcataatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 taagattatttcattgtcacttcataactataattttgatactgttgtgaatcataatac 76
Query: 421 aaatatctgatatgcaggatatctgctctgtgggaattgcaaccaaggttgaggaccact 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 75 aaatatctgatatgcaggatatctgctctgtgggagttgcaaccaaggttgaggaccact 16
Query: 481 gatacagacagaaca 495
|||||||||||||||
Sbjct: 15 gatacagacagaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
