BAC Information

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BAC

Clone NameMSMg01-534A11
Chromosome4 (Build37)
Map Location 117,655,943 - 117,656,440
singlet/doubletsinglet
Overlap geneSt3gal3
Upstream geneZswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Downstream geneJmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534A11.T7 (MSMg01no534_a11.b1)MSMg01-534A11.TJ (MSMg01no534_a11.g1)
ACCAG601811AG601812
length677720
length of high quality
(start - end)		515 (46 - 560)400 (73 - 472)
definitionCHROMAT_FILE: MSMg01no534_a11.b1 PHD_FILE: MSMg01no534_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:23 2005CHROMAT_FILE: MSMg01no534_a11.g1 PHD_FILE: MSMg01no534_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTCACACTCATGTGTGTGTAGGTGAACGTGCTTATAAAAGTC
AGAGTAGGACTGGGCAGCTTGCCTTGTCAGTCTGCCTTATTTCTTTGAGA
TAAAGTCTTTATTCCACCCAGTCTGGGATCTGCAGCCTCCAATAAAACTG
GAGTCAGCAGGTGTGTGTGCAGCTGTGCCTGGCTTTTGCCATGGATGCTG
GAATCTGAACCCAGATCCCCATAGTTCTGCTGGACTGGCCCATCTCTCTA
GCTCCTGCCTTGAATTTCTTCTGATCCCCCTTCCACCACCTCCCGGGTGC
TTCCCCCATCCCCAGGTTCCATACCTAATTTTGTTTTTTAATTTTTAATT
AATTAATTATTTTNTGGATAGGGTCTTACTATGTAGCTCTGGTCAGGGCA
GGCTTCAATTCACAGATCCACCTCCCTTTGGCTACTGAGTGCTGGGATTA
AAGGCATGGGTCACTAATTGGCCTTCCAAGCCTAGTTTCCTGCTGTGCTG
GGAACTGAATTTAAAGCTCTATGCATGTTTAGGAAGGTTCCTACCAATGG
AAATAAATCCCCCGGGCTTTTAAAAAAGGGTTCTTTTGGGGACCCCCCCG
TTTTTTTTTTATTCTTTTGTGGAAATT

CTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTACAGATTGAGTTGCCATGATGAA
TGGAATACTTTACATCTTACATTTTCTTTTTTTAAATATTTTATTTTGGC
TGGGCGGTGGCGGCGCAAACCTTTAATCCCAGCACTTGGGCGGCAGAGGC
AGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAG
GACAGCCAGGGATACACAGAGAAACCCTGTCTCGAAAAAAACAAAAAACA
AAAACAAACAAAAGAATAAATATTTTGTTTTATTTCATGTGCATTGGTGT
GAGGGTGTCAGAGGCTTTGGAACTGGAGTTACAGACAGTTGTGAGCTGCC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCNCTGGGAATT
GAACCCGAGTCCTTTGGAAGAGCACGCAGTGTTCTTAACCACTGAGCTAT
CTCTTCAGTGGCTCATCTTACATTTTCTAATTGCATATTTTTGGAATGTT
TTTAAAGAAACTCTTATCTTTTCTGTAAATTACTCTCATAATCACCCCCT
TTATTGAATTTTCGGTGTGTTCTATTGTCCTCCTCAGAGAGATATTTAGG
GAACTCTCTCGGTTGTAAGGGAAAAGCAGTCCTAATTGGGGACCTTTCTC
ATCTGCATATTGCAGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_a11.b1 MSMg01no534_a11.b1 CHROMAT_FILE:
MSMg01no534_a11.b1 PHD_FILE: MSMg01no534_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:23 2005
         (515 letters)



>mm_chr4_117655728_117656642
          Length = 915

 Score =  897 bits (464), Expect = 0.0
 Identities = 491/502 (97%), Gaps = 6/502 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  cacactcatgtgtgtgtaggtgaacgtgcttataaaagtcagagtaggactgggcagctt 75
           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 216 cacactcatgtgtgtgtaggtgaacgcgcttataaaagtcagaggaggactgggcagctt 275

                                                                       
Query: 76  gccttgtcagtctgccttatttctttgagataaagtctttattccacccagtctgggatc 135
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 gccttgtcagcctgccttatttctctgagataaagtctttattccacccagtctgggatc 335

                                                                       
Query: 136 tgcagcctccaataaaactggagtcagcaggtgtgtgtgcagctgtgcctggcttttgcc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgcagcctccaataaaactggagtcagcaggtgtgtgtgcagctgtgcctggcttttgcc 395

                                                                       
Query: 196 atggatgctggaatctgaacccagatccccatagttctgctggactggcccatctctcta 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atggatgctggaatctgaacccagatccccatagttctgctggactggcccatctctcta 455

                                                                       
Query: 256 gctcctgccttgaatttcttctgatcccccttccaccacctcccgggtgcttcccccatc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 456 gctcctgccttgaatttcttctgatcccccttccaccacctcccgggtgcttcccccatt 515

                                                                       
Query: 316 cccaggttccatacctaattttgttttttaatttttaattaattaattattttntggata 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 516 cccaggttccatacctaattttgttttttaatttttaattaattaattatttt-tggata 574

                                                                       
Query: 376 gggtcttactatgtagctct--ggtcagggcaggcttcaattcacagatccacctccctt 433
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gggtcttactatgtagctctctggtcagggcaggcttcaattcacagatccacctccctt 634

                                                                       
Query: 434 tggctactgagtgctgggattaaaggcatgggtcactaattggccttccaagcctagttt 493
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tggct---gagtgctgggattaaaggcatgggtcactaattggccttccaagcctagttt 691

                                 
Query: 494 cctgctgtgctgggaactgaat 515
           ||||||||||||||||||||||
Sbjct: 692 cctgctgtgctgggaactgaat 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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