Query= MSMg01no534_p12.b1 MSMg01no534_p12.b1 CHROMAT_FILE:
MSMg01no534_p12.b1 PHD_FILE: MSMg01no534_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:39 2005
(704 letters)
>mm_chr4_54170234_54171340
Length = 1107
Score = 1272 bits (658), Expect = 0.0
Identities = 692/704 (98%), Gaps = 3/704 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttttgtttttgagattaggctgagatg-acaatcctgaagacataa--ctgtt 60
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 204 ggaattcttttgtttttgagtttaggctgagatgaacaatcctgaagacataaccctgtt 263
Query: 61 gggaaggaatggtctggaccccgtatcacttctccttttagaaaaatcacaccaatctct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaaaggaatggtctggaccccgtatcacttctccttttagaaaaatcacaccaatctct 323
Query: 121 ctgcggctctttacattaagctgtgggtgaatatggtctatctgccttcactcactcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgcggctctttacattaagctgtgggtgaatatggtctatctgccttcactcactcacc 383
Query: 181 tctcttttacctctcaattggctgcagctggattccatcccagagcgacttattgaaagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 384 cctcttttacctctcaattggctgcagctggattccatcccagagcgacttcttaaaagt 443
Query: 241 gctctgatgactgtgactgtctcgactaatgattgggaagtagagttttcagtgtcttaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 gctctgatgactgtgactgtctcgactaatgattgggaagtagagttttcagcgtcttaa 503
Query: 301 ggttaatgcctgcattttatttcaccaccgatcctctctctgatgggtggagtttattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttaatgcctgcattttatttcaccaccgatcctctctctgatgggtggagtttattag 563
Query: 361 cctggaatctcttggcttcttcctccttttcctatttcctgttttatctttgtctccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctggaatctcttggcttcttcctccttttcctatttcctgttttatctttgtctccacc 623
Query: 421 ctttatgcactggttttctccagagtcccattcattcttggctgtcttttccacttttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttatgcactggttttctccagagtcccattcattcttggctgtcttttccacttttag 683
Query: 481 taattaccttcagttccctaagtctgactaggacacacatgctagtatttcccaactgtg 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taattaccttcagttctctaagtctgactaggacacacatgctagtatttcccaactgtg 743
Query: 541 tatttttagttgaaacttcccttggaactccagttgcatatttcaatcatctctatgaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatttttagttgaaacttcccttggaactccagttgcatatttcaatcatctctatgaca 803
Query: 601 gctttcaagtatggacctaaaggcaagtccaactagtatgttcaaagctaagtttatttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctttcaagtatggacctaaaggcaagtccaactagtatgttcaaagctaagtttatttt 863
Query: 661 ctttttttctccaagggccatctgcatcctctgcctattttttt 704
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctttccttctccaagggccatctgcatcctctgcctattttttt 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1107
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1097
Effective search space: 761318
Effective search space used: 761318
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no534_p12.g1 MSMg01no534_p12.g1 CHROMAT_FILE:
MSMg01no534_p12.g1 PHD_FILE: MSMg01no534_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:39 2005
(629 letters)
>mm_chr4_54321549_54322577
Length = 1029
Score = 1216 bits (629), Expect = 0.0
Identities = 629/629 (100%)
Strand = Plus / Minus
Query: 1 actatttcaaaaattattttagatattttcaaattttcacccttattttatttgtgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 actatttcaaaaattattttagatattttcaaattttcacccttattttatttgtgattt 770
Query: 61 tgatagaatcttatgtttaaattctttacatttaagctgccaggacatctattctatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgatagaatcttatgtttaaattctttacatttaagctgccaggacatctattctatgat 710
Query: 121 tttctttcaatatgtactttagtttgattcatctcagaaatacataaactatagcaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttctttcaatatgtactttagtttgattcatctcagaaatacataaactatagcaccat 650
Query: 181 gtaatatctcaatgagaataaacgaaatacatatttgttgtgcctttgcctgcttgatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtaatatctcaatgagaataaacgaaatacatatttgttgtgcctttgcctgcttgatgg 590
Query: 241 gacttttttctctaagtgataacttgcctagacaacaaattatacagaggcttcaccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gacttttttctctaagtgataacttgcctagacaacaaattatacagaggcttcaccact 530
Query: 301 gctctaacacaacatcttgacacaacctagtatttattctgtttggagtggtcttttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctctaacacaacatcttgacacaacctagtatttattctgtttggagtggtcttttatt 470
Query: 361 ttgaacaaatacttgtgacattttcactcttagctgaaattgtaaagcattaaaagaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttgaacaaatacttgtgacattttcactcttagctgaaattgtaaagcattaaaagaata 410
Query: 421 tatgtatatattgcttttcaacatgcctgttactcattaattttgacctgtggaagacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tatgtatatattgcttttcaacatgcctgttactcattaattttgacctgtggaagacgt 350
Query: 481 catcaacatttttcggagtcgagcctcataattagtacttaagctctaagggccgcgtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 catcaacatttttcggagtcgagcctcataattagtacttaagctctaagggccgcgtgg 290
Query: 541 cctattagcctcacttctctagtctacaatctcctcattccaactgtgtcttccaggcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctattagcctcacttctctagtctacaatctcctcattccaactgtgtcttccaggcta 230
Query: 601 ggatggagatgcttgcacacatgacaaaa 629
|||||||||||||||||||||||||||||
Sbjct: 229 ggatggagatgcttgcacacatgacaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
