Query= MSMg01no535_e09.b1 MSMg01no535_e09.b1 CHROMAT_FILE:
MSMg01no535_e09.b1 PHD_FILE: MSMg01no535_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:02 2005
(692 letters)
>mm_chr4_78307268_78308358
Length = 1091
Score = 1006 bits (520), Expect = 0.0
Identities = 549/566 (96%), Gaps = 13/566 (2%)
Strand = Plus / Minus
Query: 127 caatcccagctactcagaataccattcaaagatgcaaagagttcaataaatcataaggca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 caatcccagctactcagaataccattcaaagatgcaaagagttcaataaatcataaggca 1032
Query: 187 aaatataatgtctataggcaatacaaagctaaggacttaggctacaactagatttcttga 246
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1031 aaatataatgtctataggcaatacaaagctaaggacttaggttacaactagatttcttga 972
Query: 247 aaaccacaaaggacagtctctgtttctccaaatgggccttgacagtttttggctttaggt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 aaaccacaaaggacagtctctgtttctccaaatgggccttgacagtttttggctttaggt 912
Query: 307 actttgggaaaaacaaggctaggaagtaattaaggaagtaattaatatgtgtgctacttc 366
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 911 actttgggaaaaacaaggct------------aggaagtaattaatatgtgtgctacttc 864
Query: 367 ctatgattaactggttgtgtggaatcaacaaatttaatggtcagtttcttttcataaatc 426
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 863 ctatgattaagtggttgtgtggaatcaacaaatttaatggtcagtttcttttcttaaatc 804
Query: 427 atattttgtgaatttttatttaggaagtgccttatccaatgtgtgccaatagaagtttta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atattttgtgaatttttatttaggaagtgccttatccaatgtgtgccaatagaagtttta 744
Query: 487 taattgaagtgtgaattagaagcctttagaaatcaccactgacctgaaaaaatattcctt 546
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 taattgaagtgtgaattagaagcctttagaaatcaccactgacctg-aaaaatattcctt 685
Query: 547 agttttcttgtatcttgtgctgaggtttcagtaatgacaggaagtctggtttaaaagaca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agttttcttgtatcttgtgctgaggtttcagtaatgacaggaagtctggtttaaaagaca 625
Query: 607 ttcatcaggaaacaaatggaaagacaagtaaaaccattacagagcagctgaatcataatc 666
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcattaggaaacaaatggaaagacaagtaaaaccattacagagcagctgaatcataatc 565
Query: 667 atgtatctgatgtcagcagcgccctg 692
||||||||||||||||||||||||||
Sbjct: 564 atgtatctgatgtcagcagcgccctg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_e09.g1 MSMg01no535_e09.g1 CHROMAT_FILE:
MSMg01no535_e09.g1 PHD_FILE: MSMg01no535_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:02 2005
(623 letters)
>mm_chr4_78252927_78253949
Length = 1023
Score = 1181 bits (611), Expect = 0.0
Identities = 620/623 (99%)
Strand = Plus / Plus
Query: 1 tctgcagcttctttctccttatgccaaggaaatcttaaatatagagttctcattgcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tctgcagcttctttctccttatgccaaggaaatcttaaatatagagttctcgttgcaata 260
Query: 61 atggttcctttgatgagacttttcttggagtccttcctccttcagcctggggactgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggttcctttgatgagacttttcttggagtccttcctccttcagcctggggactgtctg 320
Query: 121 ttctgtttgaatatctttctttagagaagaccctcacttcagatattcttgaaagagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtttgaatatctttctttagagaagaccctcacttcagatattcttgaaagagttt 380
Query: 181 ttttttttaacttgattttagttctcaatgtcttacttcagaagaaattctcctgaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttaacttgattttagttctcaatgtcttacttcagaagaaattctcctgaaaaa 440
Query: 241 tatattttaatcaaacagaattacatcatttcctttctttctttcttttcactagcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatattttaatcaaacagaattacatcatttcctttctttctttcttttcactagcttct 500
Query: 301 cacaagtagcatacccgtaaccactcctgcctctcaagctgaaaaccatttcttattcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaagtagcatacccgtaaccactcctgcctctcaagctgaaaaccatttcttattcaa 560
Query: 361 ttactcttttacatacatgcatgtagacgtgtacacaaatataaagcacagcttgctgac 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ttactcttttacatacatgcatgtagatgtgtacacaaatataaagcacagcttgctgac 620
Query: 421 tgcacttttgttgttgttgtgtatatggtttcctaactagaaatcttcactcttttattt 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcactttttttgttgttgtgtatatggtttcctaactagaaatcttcactcttttattt 680
Query: 481 tcatttttgtttgtttttgtttgttgtttgttttttatatttcaaacttctgtggctttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatttttgtttgtttttgtttgttgtttgttttttatatttcaaacttctgtggctttt 740
Query: 541 gcttactgtgtagtaaaatgtctttttccccagtaaatgaatcatcgtcaacagtcagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttactgtgtagtaaaatgtctttttccccagtaaatgaatcatcgtcaacagtcagtt 800
Query: 601 ccccaggttaaataagtagaaca 623
|||||||||||||||||||||||
Sbjct: 801 ccccaggttaaataagtagaaca 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
