ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGAAGGGGGTTATTT
GATTTTCTGGAGTTCACCCTCTTGAGTTCTTTATATATATCTTTAATGAA
AAAGTAACTAATCCATTATGCTGCCTGTGAATGAAGGATATACCTCAATT
CAAAGTGGCCTTGCATGAGAGTGCATTTAATGTCTGTGACCAGATAAGTA
ACCAAATGTACATGAGAATGTGACATCATGCATAGTAATGTGTTGCAGTA
AGTCACCAACACAAATATGTCAATCTGTGGGTCAATGGGCTATGCACAGA
CAGGCTTGTCTCCAGTAAAGCTGAGGTCTGAACCCCAGTACCAGGTGGTG
GTAATTTCCACCTACATAGGATGGAAGACTTTCCCTCATGTATCCTAGAC
CCATGGCTCCTGTCAAGGTTACCGCCCCCACAGAAGTAGCATGGTTTTTA
GTCACATACACAATGTTCCAAACATCTCATCTTCAGGCTATACTCCTCCC
AGTTACCTAGTAACAATGAGATAACATTCCACTATAAGAGGGGCTGCATA
GGCCCTTCTCACTCTGTCCTCTCTCTCCTTGCTTTATCTCTCTAACGTCT
TACACTCTAGCTTTTCCTCTTTCTATCTTTCCCCCACTTCCCACTTCTCG
GTCATGGCTGGTCGCCCTCTTTCTACTTTACTCTTTTCTCCCTGACTTTC
TATAATAAATN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGGAATAACAAAAAACCTAGGA
TAGCAAAAACTCTTCTCAAGAATAAAAGTACCTCTGTTGGAATCACCATG
CGTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTA
CTGGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAG
AAATGAACCCACACACCTATGGTACCTTGATTTTCGACAAGGGAGCTAAA
ACCATCCAGTGGAAGAAAGAGCATTTTCAACAAATGGTTCTGGCACAACT
GGTTGTTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGT
ACTAAGGTCAAATCTAAGTGGATCAAGAAACTTCACATAAAACCAGAGAC
ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCA
CAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTTTATGATCA
AGGATTGACAAATGGGACCTCATGAAACTGCAAAGCTCTGCAAGGCAAAA
GACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGTATCTT
TAACTATCTTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAAA
CTCAGAAGGTGGACTCCAGAAAATCAAGAACCCCCTTAAAAGATGGAGCT
CAGAGCTAAACAAAGAA

Query= MSMg01no535_g08.b1 MSMg01no535_g08.b1 CHROMAT_FILE:
MSMg01no535_g08.b1 PHD_FILE: MSMg01no535_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:12 2005
         (626 letters)



>mm_chr4_113498736_113499754
          Length = 1019

 Score =  410 bits (212), Expect = e-118
 Identities = 402/482 (83%), Gaps = 43/482 (8%)
 Strand = Plus / Minus

                                                                       
Query: 93  atctttaatgaaaaagtaactaatccattatgctgcctgtgaatgaaggatatacctcaa 152
           |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 471 atctttaaagaaaaagtatctaatccattatgctgcctgtgaatgaaggacataacacaa 412

                                                                       
Query: 153 ttcaaagtggccttgcat--gagagtgcatttaatgtctgtgaccagataagtaaccaaa 210
           ||| |||||||| |||||  ||||||  |||| |||||||||| ||||||||||||||| 
Sbjct: 411 ttc-aagtggccatgcataggagagt--atttgatgtctgtgaacagataagtaaccaac 355

                                                                       
Query: 211 tgtacatgagaatgtgacatcatg-catagtaatgtgttgcagtaagtcaccaacacaaa 269
           ||||||||||||||||       | ||||||||||||||||||||| |||||||||||||
Sbjct: 354 tgtacatgagaatgtg-------gtcatagtaatgtgttgcagtaaatcaccaacacaaa 302

                                                                       
Query: 270 tatgtcaatc--tgtgggtcaatgggctatgcacagacaggcttgtctccagtaaagctg 327
           |||||||  |  |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 301 tatgtca--cagtgtgggtcaatgagctatgcacagacaggcttgtctccagtcaagctg 244

                                                                       
Query: 328 aggtctgaaccccagtaccaggtggtggtaatttccacctacataggatggaagactttc 387
           |||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||| |   |
Sbjct: 243 aggtctgaaccccaatacctggtggtgttaattcccacctacatgggatggaaggc---c 187

                                                                       
Query: 388 cc---tcat--gta-tcctagacccatggctcctgtcaag--gttaccgcccccacaga- 438
           ||   ||||  ||  ||||||||||||| |||||||  ||  ||||||||||||||| | 
Sbjct: 186 ccacctcatatgtcctcctagacccatgtctcctgt--agaagttaccgcccccaca-ac 130

                                                                       
Query: 439 ------agtag---catggtttttagtcacatacacaatgttccaaacatctcatcttca 489
                 || ||   ||||| |||||| |||||||||||| ||||||  |||| | ||| |
Sbjct: 129 cctcacaggagaaacatggcttttagacacatacacaatattccaagtatctga-cttta 71

                                                                       
Query: 490 -ggctatactcctcccagttacctagtaacaatgagataacattccactataagaggggc 548
            ||||| | || |||||||||||||| |||||  ||||||||  |||| |||||||||||
Sbjct: 70  aggctaaattcatcccagttacctagcaacaaaaagataacagcccacaataagaggggc 11

             
Query: 549 tg 550
           ||
Sbjct: 10  tg 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1019
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1009
Effective search space:   621544
Effective search space used:   621544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)