Query= MSMg01no536_f04.b1 MSMg01no536_f04.b1 CHROMAT_FILE:
MSMg01no536_f04.b1 PHD_FILE: MSMg01no536_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:23 2005
(591 letters)
>mm_chr4_14453243_14454233
Length = 991
Score = 1106 bits (572), Expect = 0.0
Identities = 584/588 (99%)
Strand = Plus / Plus
Query: 4 ggaattctttatctgaagaaaagaaacacaaaacacaaaatgtttgcttagaaaggaaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttatctgaagaaaagaaacacaaaacacaaaatgtttgcttagaaaggaaac 263
Query: 64 gggaaatcttgagaaaatagatatataaagacgcattcattccttaaacaagtctgaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggaaatcttgagaaaatagatatataaagacgcattcattccttaaacaagtctgaaat 323
Query: 124 aaatatctctagagtggatttattttagacgtgaaacaattttcttgtgccttatccaca 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 aaatatctctagagtggatttattttagatgtgaaacaattttcttgtgccttatccaca 383
Query: 184 taaaactggtttaaaataagcagttttgcaaagctaaacccgtggaagcgaatggagggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaactggtttaaaataagcagttttgcaaagctaaacccgtggaagcgaatggagggg 443
Query: 244 gttttgccttaaaaaccttctgctttatatgtttttatcatgaggtcatcccagcctgcc 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttttaccttaaaaaccttctgctttatatgtttttatcatgaggtcatcccagcctgcc 503
Query: 304 accctataggctgggacgcagttgttccctttaattcagaagaactagccatcatttatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accctataggctgggacgcagttgttccctttaattcagaagaactagccatcatttatc 563
Query: 364 tagccatcattttagcccttattgcacacactgtatctctcctccctagcctatgatata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagccatcattttagcccttattgcacacactgtatctctcctccctagcctatgatata 623
Query: 424 tttaatcctatgcacaatagagttgcaagtttactgtaacttccacttcccattatgatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaatcctatgcacaatagagttgcaagtttactgtaacttccacttcccattatgatt 683
Query: 484 ctgagttctacctttcctcggtgctgagcctgcctgagtgtagcagaacagtacctcttc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 684 ctgagttctacctttcctcggtgctgagcctgcctgagtgtagcagaacagtacgtcatc 743
Query: 544 agagtattgagccccactcctcccaaccaatctccatacttacagaag 591
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agagtattgagccccactcctcccaaccaatctccatacttacagaag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_f04.g1 MSMg01no536_f04.g1 CHROMAT_FILE:
MSMg01no536_f04.g1 PHD_FILE: MSMg01no536_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:23 2005
(591 letters)
>mm_chr4_14624603_14625593
Length = 991
Score = 973 bits (503), Expect = 0.0
Identities = 550/591 (93%), Gaps = 40/591 (6%)
Strand = Plus / Minus
Query: 1 ttattacaaggtaccaaggcaaatatggagagatgtttttagagcaaaatgggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttattacaaggtaccaaggcaaatatggagagatgtttttagagcaaaatgggaaaatcc 786
Query: 61 ctcaaaatctagaatgactggtggtggtgctgttgatgtttgtttgtttgagacaagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctcaaaatctagaatgactggtggtggtgctgttgatgtttgtttgtttgagacaagacc 726
Query: 121 ttagtgtgtagctctagcagatcttatacttgccatatagttcaggttgatcatgaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttagtgtgtagctctagcagatcttatacttgccatatagttcaggttgatcatgaagtt 666
Query: 181 cctgctatcttcctgcttcagcctgctcagtgcatcatcatgccaagcattacgtagcta 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 665 cctgctatcttcctgcttcagcctgctcagtgcatcaccatgccaagcattacgtagcta 606
Query: 241 gatagctagaaaagttgatcaataaaaggcatgggaatgtcagaaattttgagaaaagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gatagctagaaaagttgatcaataaaaggcatgggaatgtcagaaattttgagaaaagtg 546
Query: 301 gaaaagaaaattgtttgctttgttatgaaacaaccattgattttaatcctattaaaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaaaagaaaattgtttgctttgttatgaaacaaccattgattttaatcctattaaaaatt 486
Query: 361 aggaagtggatgggtgatatatgtcagagtaagagctcttgcttagtgtgtggtctcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aggaagtggatgggtgatatatgtcagagtaagagctcttgcttagtgtgtggtctcagt 426
Query: 421 aactgtcacagcaaataaataaataaataaataaataaataaataaataaataaataaat 480
|||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactgtcacagcaaataaataaataaataaataaata----------------------- 389
Query: 481 aataaataataaataataaataaataaatgcatgcaaaaagtaaactcatgctattagta 540
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 388 --------------aataaataaataaatgca---aaaaagtaaactcatgctattagta 346
Query: 541 gtattcaacagtgaaaaagtatatgtttatcatctttattatgaacgaatt 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtattcaacagtgaaaaagtatatgtttatcatctttattatgaacgaatt 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
