BAC Information

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BAC

Clone NameMSMg01-536H14
Chromosome4 (Build37)
Map Location 117,829,250 - 117,829,807
singlet/doubletsinglet
Overlap geneJmjd2a
Upstream geneKif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
Downstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536H14.T7 (MSMg01no536_h14.b1)MSMg01-536H14.TJ (MSMg01no536_h14.g1)
ACCAG603678AG603679
length785776
length of high quality
(start - end)		495 (49 - 543)558 (67 - 624)
definitionCHROMAT_FILE: MSMg01no536_h14.b1 PHD_FILE: MSMg01no536_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:35 2005CHROMAT_FILE: MSMg01no536_h14.g1 PHD_FILE: MSMg01no536_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGGGATGTGCATGAAGCATGGAGATGAGGTGTACACATGG
AAGTCACAGGAAGATGTTGAGTGTACTGCTTTATCATGCTCTGCCTTAGT
CCTTGAGATGAGGCCCCTTCTTGTAACTAGAGCTAGACTGGCAGCCAGAA
AGCTGCTGAGGTCCTCCTGTCTTCCCGCACTACAGCTCTGGAGTTGCCAG
AACGCACACATCCAACTTTTTATCTCCTTTATGTTTATTTAATGTGTAGG
GGTGTTTTGCCTACATGTATGTCATATTCGTGCAATGGCCAAGGAGCCCA
GGACAGCCATCAGATCCTGGGTACTGGGGTTAGAGATGGCTGTGAGACAC
CATGTGGATGCTGGTAATCAAACCTGGGTCATCTGGAAGAGCATCCAGGG
TTCCTAAGCACTGAGCCATCTCTCTAGTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCNCTATCTCTCTCTCTTTCTCT
CTCTTTCCCTCTCTCTCTCTTTTTCTCATNTTCATTCCTTCACACACACA
TTTATATTTTTTACCTATAGTTACCTCTCTCGTATTTCGCGTTTATCCCC
TTTCCTTTCTCTACTTGCGTTACCACGTCCCCATTACCTGCCATCCCTTT
TTTGCTTGTTTTCCCCTTTCTCTCCCCTTTGTAAGGTTTTGTCCCCCCTT
GTTCCCCCTTTTTTCCCATCCTTATTACATCCATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAAAGAAATGGAAAGGAGGCCGAGCGCACCGGG
CTTTGCAGCAGGACGGAGAGGCATCTGAAGAGAAGCCTCCCTACTCTGCG
GGTTACCATGGCGAAGGCGTCCTGGCTTCTGTCCACGACACGGATGCTCA
GTGTGCAGCAGCGAGCTGCAATCTGCCTGCGGCAGAGTACACACTAGTCT
GCAGCCTTTCTATGCGAGAGCTTGGGCAAGGCTTTGTCCCTTCCCAGAGC
CTGTGGACACCCAGGACAGCCTGTCCCTAGGTCATCCATCTATTTGAAAG
CAAAAGAGGAGTAGGACTATTTACCGACAGGTTAAAGAAAAGTCACTTTG
TTCCATAGTATTTACTGATAAAAAGATGACACCTAGTCCCCATATGCCCA
TTTTTTTAATCCATCACTTAACTGATATCAAATATAGGAAGAAAAGGAGA
CGACTGGTATTTATTGACTTACTGGAAGCTCTCCAAATATAAAATAAAAA
TCACACCAAAAAACTCCAGTAACATTAATTTATAGTAATGGACTGAACAA
TGTTCATAAAATATTTAGGATCCATTACATCTTTGCTGTTTGCTAGCTAG
TTTTTGGACTGTGATTGCAACTCGAAGCACGAAGTCAGGATTCTGCAAGC
ACAGGACACACGGGGGTAAACCGCCGTGCCACAGCAGGGCAAGCTGGCAC
CCGAGGGCTTGTTGAGAAGAACGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_h14.g1 MSMg01no536_h14.g1 CHROMAT_FILE:
MSMg01no536_h14.g1 PHD_FILE: MSMg01no536_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:35 2005
         (558 letters)



>mm_chr4_117829050_117830007
          Length = 958

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagaaatggaaaggaggccgagcgcaccgggctttgcagcaggacggagaggcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagaaatggaaaggaggccgagcgcaccgggctttgcagcaggacggagaggcatct 260

                                                                       
Query: 61  gaagagaagcctccctactctgcgggttaccatggcgaaggcgtcctggcttctgtccac 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagaagcctccctaccctgcgggttaccatggcgaaggcgtcctggcttctgtccac 320

                                                                       
Query: 121 gacacggatgctcagtgtgcagcagcgagctgcaatctgcctgcggcagagtacacacta 180
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatggatgctcagtgtgcagcagcgagctgcaatctgcctgcggcagagtacacacta 380

                                                                       
Query: 181 gtctgcagcctttctatgcgagagcttgggcaaggctttgtcccttcccagagcctgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gtctgcagcctttctatgcgagagcttgggcaaggctttgtcccttcccagagcccgtgg 440

                                                                       
Query: 241 acacccaggacagcctgtccctaggtcatccatctatttgaaagcaaaagaggagtagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacccaggacagcctgtccctaggtcatccatctatttgaaagcaaaagaggagtagga 500

                                                                       
Query: 301 ctatttaccgacaggttaaagaaaagtcactttgttccatagtatttactgataaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatttaccgacaggttaaagaaaagtcactttgttccatagtatttactgataaaaaga 560

                                                                       
Query: 361 tgacacctagtccccatatgcccatttttttaatccatcacttaactgatatcaaatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacacctagtccccatatgcccatttttttaatccatcacttaactgatatcaaatata 620

                                                                       
Query: 421 ggaagaaaaggagacgactggtatttattgacttactggaagctctccaaatataaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaagaaaaggagacgactggtatttattgacttactggaagctctccaaatataaaata 680

                                                                       
Query: 481 aaaatcacaccaaaaaactccagtaacattaatttatagtaatggactgaacaatgttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatcacaccaaaaaactccagtaacattaatttatagtaatggactgaacaatgttca 740

                             
Query: 541 taaaatatttaggatcca 558
           ||||||||||||||||||
Sbjct: 741 taaaatatttaggatcca 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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