NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCNGGAATTCCAGGACAGTCAGGAATACACAGAAGAAAACCTGGTCT
CGAAAAACCTAAAAAAAAAAAAAAAAAAAAAAAGGGCATCATTTTTTTCT
CAAAAGGGTATCTTTGTCAGTCACTATCCTCCTACCAGAAGTCATAAGAT
TTTTTTCCTTTCTAATTCCTTCCTCACTTAATTATATCATTAATATCATG
ATCATGGTAATGACAGACTGTACTTATTTTTCCTCTTTTTGTACATATTT
GACCTTGGGACAATAATATATATGTATATACTTTGGTTTATCTATATATA
AATTTTATTATCATTTTTGGTGGATTTTTTTGCAAATAATATTAAAGGTT
ATATATTTCACAGAAGTCATAGCAAAAAAAATAGTAATAATGCAAAACAA
TTCTATGTCTCCTGTTAAAAACAAACAAGAAAACAAAAAACAAAAAGCAA
ACAAAAATACCCGTTTACAAATTCTGTAGTTTTGTTGAAAATAATTTTTT
GACACAAATTCATCTACTGCCATAACAGCACTCTTAGTGACTTTTCTCTT
TGGGATCATTTACTAATGATTTTACTGTCCTGTCTTGGGTTTGATCATTA
TGGAGCATCAGTGGATTAGGAATGTAGGTATTTCCAAATCAAGATCTCTA
AAGGTTTTTATCAAATTGTTGGGCAGAACTTCTGTCATATGTAGAAATGA
AAGTN

NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTAGTTCTGAGCCCCAT
TTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGTGTTCTT
TATATATATTGGATATTATTCCCCTATCTGATTTAGGATAGGTAAAAAAC
CTTTCCCAATCTGTTGGTAGCCTTTTTGTCTTATTGATAGTGTCTTCTGC
CTTGCAGAAGCTTTGCAATTTTATGAGGCCCCATTTGTCGATTCACTATC
TTAGAGCACAAGCCATTACCGTTGTATTAAGGAATTTTTCCCCTGTGCCC
ATATCTTCGAGTCTTTCTCATACTTTCTCCTCTATAAGTTTCAGTGTCTC
TGGTTTTATGTGGAGTTCCTTAATGCACTTAGATTTGTCCTTAGTACAGG
CAGATTGGAATGGATCAATTCGCATTCTTCTACATGATAACCAACAGTTG
TGCCAGCACCATTTGTTGAAAATGCTTTCTTCCACTGGATGGTTTTAGCT
CCCTTGTCAAAGATCAAGTGATCATAGATGTGTGGGTTCATTTCTGAGTC
TTCAATTCTATTCTATTGGTCTACTTTTCTGTCACTATACCAGTTTTTAT
CACAATTGCTCTTAGAACTCTTGCATGTGCTCAAGAAGAACGACGCTGCA
ACAGGATCCTTCTGCACATGTTTATTGGGAGAGCATTGATTGCATA

Query= MSMg01no537_b19.b1 MSMg01no537_b19.b1 CHROMAT_FILE:
MSMg01no537_b19.b1 PHD_FILE: MSMg01no537_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:24 2005
         (655 letters)



>mm_chr4_17195821_17196874
          Length = 1054

 Score = 1118 bits (578), Expect = 0.0
 Identities = 635/656 (96%), Gaps = 9/656 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttccaggacagtcaggaatacacagaagaaaacctggtctcgaaaaacctaaaaaaaaaa 61
           ||||||||||| |||| ||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 205 ttccaggacagccagggatacacaga-gaaaacctg-tctcgaaaaaccaaaaaaaaaaa 262

                                                                       
Query: 62  aaaaaaaaaaaaagggcatcatttttttctcaaaagggtatctttgtcagtcactatcct 121
           ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 263 aaaaaaaaaaaaagg-catcatttttttctcaaaagggtatctttttcagccactatcct 321

                                                                       
Query: 122 cctaccagaagtcataagattt--ttttcctttctaattccttcctcacttaattatatc 179
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctaccagaagtcataagatttatttttcctttctaattccttcctcacttaattatatc 381

                                                                       
Query: 180 attaatatcatgatcatggtaatgacagactgtacttatttttcctctttttgtacatat 239
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attaatatcatgaccatggtaatgacagactgtacttatttttcctctttttgtacatat 441

                                                                       
Query: 240 ttgaccttgggacaataatatatatgtatatactttggtttatctatatataaattttat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgaccttgggacaataatatatatgtatatactttggtttatctatatataaattttat 501

                                                                       
Query: 300 tatcatttttggtggatttttttgcaaataatattaaaggttatatatttcacagaagtc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 tatcatttttggtggatttttttgcaaataatattaaaggttatatatttcaaagaagtc 561

                                                                       
Query: 360 atagcaaaaaaaatagtaataatgcaaaacaattctatgtctcctgttaaaaacaaacaa 419
           ||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 atag---aaaaaatagtaataatgcaaaacatttctatgtctcctgttaaaaacaaacaa 618

                                                                       
Query: 420 gaaaacaaaaaacaaaaagcaaacaaaaatacccgtttacaaattctgtagttttgttga 479
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 gaaaacaaaaaacaaatagcaaacaaaaatacccttttacaaattctgtagttttgttga 678

                                                                       
Query: 480 aaataattttttgacacaaattcatctactgccataacagcactcttagtgacttttctc 539
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaataatcttt-gacacaaattcatctactgccataacagcactcttagtgacttttctc 737

                                                                       
Query: 540 tttgggatcatttactaatgattttactgtcctgtcttgggtttgatcattatggagcat 599
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttgggatcatttactaattattttactgtcctgtcttgggtttgatcattatggagcat 797

                                                                   
Query: 600 cagtggattaggaatgtaggtatttccaaatcaagatctctaaaggtttttatcaa 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cagtggattaggaatgtaggtatttccaaatcaagatctctaaaggtttttatcaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space:   673380
Effective search space used:   673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)