BAC Information

Click to search

BAC

Clone NameMSMg01-537E22
Chromosome4 (Build37)
Map Location 20,346,294 - 20,490,665
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537E22.T7 (MSMg01no537_e22.b1)MSMg01-537E22.TJ (MSMg01no537_e22.g1)
ACCAG604310AG604311
length750760
length of high quality
(start - end)		701 (50 - 750)601 (80 - 680)
definitionCHROMAT_FILE: MSMg01no537_e22.b1 PHD_FILE: MSMg01no537_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:39 2005CHROMAT_FILE: MSMg01no537_e22.g1 PHD_FILE: MSMg01no537_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,490,066 - 20,490,665)(20,346,294 - 20,346,894)
sequence
NNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTATAGGATCTTCATTAATAATCGAGAAATCATCTATTTGT
CTGTATAGCATCACTACAAAACAGTACACCTTCATAGTTATGCAGGGATC
TGCTCAAATGCTGTTCTAATACCTAGTCAAATATGTTTAATGTCAAATAT
GTTTAATAATAACAGGAAAAGCATAGTAAGAGCAGGAATCTTTCCTAAAA
TGATGGGAGCAAATCTGTCATGGATTATCATAATGCAAGGAAGACCATCT
CAGGAAGATCACCTGCTCGTTATTAGTTTGTCATATGATGGCTGCTGACA
GTATAGCACACTGGAAGCTCAGTATGTTTATTATATAGAGTTGAAAAGGG
GGCAAGTTTACTGCAAACAACTGAACAAGAAACCAGGATTGTGGTATACA
GAAGAATCCAGAAAGCAGGCTTAGCTGATCTCTATCAAAGCAGTCCCTTA
ACTAGCAGGTTGGAGAATGGTTAGGTATGGTAGACTTCTCTCTACACAAT
GCTGATATTAATACTTGGACAACCGAGGAAGTCATTGCTGAACTTCTGGG
TCTCATGAAAGGAAGAACTCTTGTTCCAAAGGTGCTGAAGTATTGGAGTC
CTCGTCATGGCATGCCAAATCAACAATTCACTCAGGGTTTCACTCTCTCC
AGGTTTCCTCTGTTTCCCCACAGCTTTCCTTCTATTTTTCTTTCTTATCA


NNNNGGCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGAGCAAGAGAGAC
AACTAACCTGGACTCTCAGAGTCTGAACCACCAACTGAAGAACATTCACG
GGCTGGACCTATGCCTCTCCACACATACATAGCAGATGTGCAGCTTGGTC
TTCATGTGGGTCTCCCAACAACTGGAGCAGGGCAAAAGCTGTTGCCTTTA
GGTGGGCTATGTTCTTCTAGCTGGGCTACCTTGTCTGGCCTCACTGGGAG
AGGAACGGTCTATCTTTGCATAGACTTGAGGTTCTAGAGTGGGGGAACAT
CCAGGGAACCTCACTTGCTCAAGGAGAAGGGGAGGAGGGATTGGGAAAGG
ATTGTGGAGGGGGGTAATGAGCAGAATGTAAAGTGAATAAGTAAAAAACA
ATTAAATTATATTTAAAATGTACTTGTCTTCTGAAGCAGAAATCAAGACT
CATTCCTAACCCTTACCCTGTGTCTCATACCCCTTTCTGTGTCTAAAACA
TGTGCTGCCTTGAGAAGAAGGCTTCAAGGTTAGAGACACTAGCTGAGGTT
TCAGGGGCCCAGAGTTCCTCAGTAAACTGGTGGCACACATCCCACATCAG
GTGGCTCACAGCTGCCTGTGATGCCAGGTAGAGGGGATCAGACACCATCT
TATGTTCCGCATGAGTACTCATACTTATGGAGAAAATACNGAGACATATA
AATATACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_e22.b1 MSMg01no537_e22.b1 CHROMAT_FILE:
MSMg01no537_e22.b1 PHD_FILE: MSMg01no537_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:39 2005
         (701 letters)



>mm_chr4_20489565_20490665
          Length = 1101

 Score = 1114 bits (576), Expect = 0.0
 Identities = 594/600 (99%)
 Strand = Plus / Minus

                                                                        
Query: 102  tgctcaaatgctgttctaatacctagtcaaatatgtttaatgtcaaatatgtttaataat 161
            |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tgctcaaacgctgttgtaatacctagtcaaatatgtttaatgtcaaatatgtttaataat 1042

                                                                        
Query: 162  aacaggaaaagcatagtaagagcaggaatctttcctaaaatgatgggagcaaatctgtca 221
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1041 aacaggaaaagcatagtaagagcaggaatcttccctaaaatgatgggagcaaatctgtca 982

                                                                        
Query: 222  tggattatcataatgcaaggaagaccatctcaggaagatcacctgctcgttattagtttg 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  tggattatcataatgcaaggaagaccatctcaggaagatcacctgctcgttattagtttg 922

                                                                        
Query: 282  tcatatgatggctgctgacagtatagcacactggaagctcagtatgtttattatatagag 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  tcatatgatggctgctgacagtatagcacactggaagctcagtatgtttattatatagag 862

                                                                        
Query: 342  ttgaaaagggggcaagtttactgcaaacaactgaacaagaaaccaggattgtggtataca 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  ttgaaaagggggcaagtttactgcaaacaactgaacaagaaaccaggattgtggtataca 802

                                                                        
Query: 402  gaagaatccagaaagcaggcttagctgatctctatcaaagcagtcccttaactagcaggt 461
            | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 801  gcagaatccagaaagcaggcttagctgatctctatcaaagcagtctcttaactaacaggt 742

                                                                        
Query: 462  tggagaatggttaggtatggtagacttctctctacacaatgctgatattaatacttggac 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  tggagaatggttaggtatggtagacttctctctacacaatgctgatattaatacttggac 682

                                                                        
Query: 522  aaccgaggaagtcattgctgaacttctgggtctcatgaaaggaagaactcttgttccaaa 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  aaccgaggaagtcattgctgaacttctgggtctcatgaaaggaagaactcttgttccaaa 622

                                                                        
Query: 582  ggtgctgaagtattggagtcctcgtcatggcatgccaaatcaacaattcactcagggttt 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  ggtgctgaagtattggagtcctcgtcatggcatgccaaatcaacaattcactcagggttt 562

                                                                        
Query: 642  cactctctccaggtttcctctgtttccccacagctttccttctatttttctttcttatca 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  cactctctccaggtttcctctgtttccccacagctttccttctatttttctttcttatca 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_e22.g1 MSMg01no537_e22.g1 CHROMAT_FILE:
MSMg01no537_e22.g1 PHD_FILE: MSMg01no537_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:39 2005
         (601 letters)



>mm_chr4_20346094_20347094
          Length = 1001

 Score = 1100 bits (569), Expect = 0.0
 Identities = 593/601 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggaagagcaagagagacaactaacctggactctcagagtctgaaccaccaactgaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaggaagagcaagaaagacaactaacctggactctcagagtctgaaccaccaactgaa 260

                                                                       
Query: 61  gaacattcacgggctggacctatgcctctccacacatacatagcagatgtgcagcttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacattcacgggctggacctatgcctctccacacatacatagcagatgtgcagcttggt 320

                                                                       
Query: 121 cttcatgtgggtctcccaacaactggagcagggcaaaagctgttgcctttaggtgggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cttcatgtgggtctcccaacaactggagcagggcaaaagctgttgcctttaggtgggata 380

                                                                       
Query: 181 tgttcttctagctgggctaccttgtctggcctcactgggagaggaacggtctatctttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcttctagctgggctaccttgtctggcctcactgggagaggaacggtctatctttgc 440

                                                                       
Query: 241 atagacttgaggttctagagtgggggaacatccagggaacctcacttgctcaaggagaag 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atagacttgaggttctagagtgggggaacatccagggagcctcacttgctcaaggagaag 500

                                                                       
Query: 301 gggaggagggattgggaaaggattgtggaggggggtaatgagcagaatgtaaagtgaata 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 gggaggagggattgggaaaggattgtggagggggataatgagcagaatgtaaagtgaata 560

                                                                       
Query: 361 agtaaaaaacaattaaattatatttaaaatgtacttgtcttctgaagcagaaatcaagac 420
           ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||
Sbjct: 561 agtaaaaaacaattaaattgtatttaaaacatacttgtcttctgaagcagaaatcaagac 620

                                                                       
Query: 421 tcattcctaacccttaccctgtgtctcatacccctttctgtgtctaaaacatgtgctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcattcctaacccttaccctgtgtctcatacccctttctgtgtctaaaacatgtgctgcc 680

                                                                       
Query: 481 ttgagaagaaggcttcaaggttagagacactagctgaggtttcaggggcccagagttcct 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ttgagaagaaggcttcaaggttagagacactagctgaggtttcaggggcccagagtccct 740

                                                                       
Query: 541 cagtaaactggtggcacacatcccacatcaggtggctcacagctgcctgtgatgccaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtaaactggtggcacacatcccacatcaggtggctcacagctgcctgtgatgccaggt 800

            
Query: 601 a 601
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |