Query= MSMg01no537_f12.b1 MSMg01no537_f12.b1 CHROMAT_FILE:
MSMg01no537_f12.b1 PHD_FILE: MSMg01no537_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
(641 letters)
>mm_chr4_128201213_128202255
Length = 1043
Score = 870 bits (450), Expect = 0.0
Identities = 472/480 (98%), Gaps = 3/480 (0%)
Strand = Plus / Minus
Query: 4 ggaattctaaggattacgtcaagaaaagtaaaattcaggttaaagaacattaaaagagat 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggaattctaaggatgaagtcaagaaaagtaaaattcaggttaaagaacattaaaagagat 420
Query: 64 gaagaagctacttctaaaggtgagaagttacaatttgccacagagctctaagtgttccgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaagaagctacttctaaaggtgagaagttacaatttgccacagagctctaagtgttccgg 360
Query: 124 acatagcaacgacctgcagggaatgctaggaaaaatgccagtacattgataactgaacac 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acatagcaacgacctgcaggaaatgctaggaaaaatgccagtacattgataactgaacac 300
Query: 184 tttaaacacatctttcaaagaaaactgctcaagtgggcaaaatcaggaaaaaaa--aaac 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 299 tttaaacacatctttcaaagaaaactgctcaagtgggcaaaatcaggaaaaaaaccaaac 240
Query: 242 aaacagaaaggacataattcacaaggtacatcttaggaatacatgttcttgctctcaagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaacagaaaggacataattcacaaggtacatcttaggaatacatgttcttgctctcaagt 180
Query: 302 gtacatgggacattcataacgattgaccaactgtttattcagaaggaaagcatctgtaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtacatgggacattcataacgattgaccaactgtttattcagaaggaaagcatctgtaaa 120
Query: 362 tgtcaagaaatagaattagtgtgcataatgtatataaaataaaagtgaaaaggtctgtcg 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 119 tgtcaagaaatagaattagtgtgcataatgtatataaaataaaagtgaaaaggtctgttg 60
Query: 422 gcttagaaattttaaaaaaatttattaaaaccttccaattgtagggatgggcaattaatg 481
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gcttagaaa-tttaaaaaaaattattaaaaccttccaattgtagggatgggcaattaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space: 651823
Effective search space used: 651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_f12.g1 MSMg01no537_f12.g1 CHROMAT_FILE:
MSMg01no537_f12.g1 PHD_FILE: MSMg01no537_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
(550 letters)
>mm_chr4_128046898_128047847
Length = 950
Score = 853 bits (441), Expect = 0.0
Identities = 507/547 (92%), Gaps = 28/547 (5%)
Strand = Plus / Plus
Query: 1 cacatatcacgccaatcatagaaactatctgcagctggcaaaaccacacttctgctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cacatatcacgccaatcatagaaactatctgcagctggcaaaaccacacttctgctagag 288
Query: 61 cacgaggcagatcatagtcagctgctgcaaacagctcaaagcagccccatatctccacac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 289 cacgaggcagatcatagtcagctgctgcagacagctcaaagcagccccatatctccacac 348
Query: 121 ctgggacgaaactgaaagcccatttttaaagtacattttcaagaatccaaaattccagaa 180
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgggactaaactgaaagcccatttttaaagtacattttcaagaatc------------- 395
Query: 181 ctctcagaaatgtcactacacccgggttctctcatcagctctccacccttacatccccaa 240
|||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct: 396 ---------------ctacacccgggttccctcatcagctccccacccctacatccccaa 440
Query: 241 gtcctccactgctgcttcctgttgctcactactgttctacagtttaccgtgtctgagccc 300
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 441 gtcctccactgctgcttcctgttgatcactgctgttctacagtttaccttgtctgagccc 500
Query: 301 cataatcataaaagagtcaaagccttgctgtgtttccatggtttttcctgcaggcccact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataatcataaaagagtcaaagccttgctgtgtttccatggtttttcctgcaggcccact 560
Query: 361 gcagctgctcataggtcatttcccacagtccttcccatggccagtctggaagttgtccca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagctgctcataggtcatttcccacagtccttcccatggccagtctggaagttgtccct 620
Query: 421 tcagtctctatcctgagtccattgtccagaagcagcctggagctcagccattgtgttttt 480
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 621 tcagtctctatcctgagtccattgtccagaagcagcccggagctcagccatcatgttttt 680
Query: 481 cttatccctgtgtctcctggacttggtggacacaggagacagccagaacctgggaacagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttatccctgtgtctcctggacttggtggacacaggagacagccagaacctgggaacagc 740
Query: 541 aagcttc 547
|||||||
Sbjct: 741 aagcttc 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
