BAC Information

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BAC

Clone NameMSMg01-537M21
Chromosome4 (Build37)
Map Location 88,229,186 - 88,229,784
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14
Downstream geneIfna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537M21.T7 (MSMg01no537_m21.b1)MSMg01-537M21.TJ (MSMg01no537_m21.g1)
ACCAG604688AG604689
length738754
length of high quality
(start - end)		603 (53 - 655)307 (84 - 390)
definitionCHROMAT_FILE: MSMg01no537_m21.b1 PHD_FILE: MSMg01no537_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:16 2005CHROMAT_FILE: MSMg01no537_m21.g1 PHD_FILE: MSMg01no537_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAACTCTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGATATGTCTCAACTCATCAGGTGAACATACAGGACA
CTCATATCAGTACTGTTGCTTGGGTATTATTTACCTGGAAATCTTTTCTG
ACAAATGAATATCGCCATGCTTTCTTCTTTGTCTAACTGCAAAAATGAAT
GGCAGTCAGGTCCATTCTACTGTGTCAGAAAGAAGAGTTTTCTATTCTTC
AACTATGTATGAGTTTTCATACATAGAGCAATGGTGGATGCCTGCACATT
GGTCTTTTGTTTACATTAACTTCATGGTGAAGAAAGATTAGTGGAGTGAA
ACAATCAAATACAAAATGATAACCACCTTCCTATATAAATTTTCTTTGCT
TCCCACATTTTGTTTCTCTTTTGTACTTTCCTAAAAGCAGATCCAAATGT
TGGTGTGTGGCAGAGCTAAAATCATGCCTCCACATGAAATGAAACCAAAG
AAAGAAACCTGTCATCAAAATAGGGAAATTAGCAATAATGATATCTATGC
TTGGTTTAGAAGGTCTACCGTCATTAGAAAAATACTATTCAATAAAAGTG
ATTACATATTTGAAAGTCTTTTATAAAGTCAGTGTGATTACAATAAAAAT
TTTAGTATGCAATTTCAACAGCATCAATATTAAAACACATATGGAACAGA
AAGTTGTAAATAGCAGAAGCACTATGGGAAAGAAATAN

NNNAAAACCATTGCCACCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCTCAGCACCCAC
GTAAGAGCCAGGAACACTGGTGCATGTTGATAGCCTGGAGCTTATAGGAA
GGAGAATAGTGACAGGTGGCATGGTGTTCTGAATGGGAAGTCCTTCATAG
GTTCTGCCATTTGGATACTTGGTTTCCAGTTGATGGTGCATACTATGTAG
AACATGTGTCCTTGTTGAAGAAGATATGCCACTGGAGCCAGGACTTGAGA
GTTTAAAAACTCAAACCATTTGGAATTTGCTTTTCTCTGCTATGGGCTTG
TGGTTCAAGATAAAAGCCCCCAGCTTCCTGCTCCTGCAGCCACATCTTTG
CTCTACCATCAAGGACACTAGCCCTCTGAAACCATAAGCTCAAAGAAACT
TTTTCTTCTATAAATTTTCTTGGTTAATGGGGTTTTCTTACAGCCCCCAA
AAATGGAACCAAAATTTTTTTGAACCCACTTTCGGGATAAAAAACCTTTT
TCGGTCCCCCGGGAAAAAAAACCCCTGGGGTNNNGGGGGGGGGGGCTTTT
TTTTTTTTAATGAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTT
GTGGGGCCGCCCCCACCCACAAAAAAAAAAAAAAAAAAAAAATAATTTTT
TATTTTNTTTTCAATAANNACAAGAAAAAGGCCGACTCTATCTCTGTTAT
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_m21.b1 MSMg01no537_m21.b1 CHROMAT_FILE:
MSMg01no537_m21.b1 PHD_FILE: MSMg01no537_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
         (603 letters)



>mm_chr4_88228982_88229984
          Length = 1003

 Score = 1096 bits (567), Expect = 0.0
 Identities = 591/599 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgatatgtctcaactcatcaggtgaacatacaggacactcatatcagtactgt 64
           ||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcttgatatgtctgaatttatcaggtgaacatacaggacactcatagcagtactgt 264

                                                                       
Query: 65  tgcttgggtattatttacctggaaatcttttctgacaaatgaatatcgccatgctttctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcttgggtattatttacctggaaatcttttctgacaaatgaatatcgccatgctttctt 324

                                                                       
Query: 125 ctttgtctaactgcaaaaatgaatggcagtcaggtccattctactgtgtcagaaagaaga 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ctttgtctaactgcaaaaatgaatggcagtcaggtccatcctactgtgtcagaaagaaga 384

                                                                       
Query: 185 gttttctattcttcaactatgtatgagttttcatacatagagcaatggtggatgcctgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttttctattcttcaactatgtatgagttttcatacatagagcaatggtggatgcctgca 444

                                                                       
Query: 245 cattggtcttttgtttacattaacttcatggtgaagaaagattagtggagtgaaacaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattggtcttttgtttacattaacttcatggtgaagaaagattagtggagtgaaacaatc 504

                                                                       
Query: 305 aaatacaaaatgataaccaccttcctatataaattttctttgcttcccacattttgtttc 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatacaaaaagataaccaccttcctatataaattttctttgcttcccacattttgtttc 564

                                                                       
Query: 365 tcttttgtactttcctaaaagcagatccaaatgttggtgtgtggcagagctaaaatcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttttgtactttcctaaaagcagatccaaatgttggtgtgtggcagagctaaaatcatg 624

                                                                       
Query: 425 cctccacatgaaatgaaaccaaagaaagaaacctgtcatcaaaatagggaaattagcaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctccacatgaaatgaaaccaaagaaagaaacctgtcatcaaaatagggaaattagcaat 684

                                                                       
Query: 485 aatgatatctatgcttggtttagaaggtctaccgtcattagaaaaatactattcaataaa 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatgatatctatgcttggcttagaaggtctaccgtcattagaaaaatactattcaataaa 744

                                                                      
Query: 545 agtgattacatatttgaaagtcttttataaagtcagtgtgattacaataaaaattttag 603
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 agtgattacatatttgaaagtcttctataaagtcagtgtgattacaataaaaattttag 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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