XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTATTGACAGTACAGTGACTATTTGATCCCTGCTCCCAATAGTCAATAT
TATACAATAGTCCAGGGAGTGATTTGTTTTGTAGGAATATTGGAACTATC
TGCAACGAAGATGGATTTTCCTGTCTTGCTATGTGACATCTTATGAACAA
ACAATAAAGAATAATAATAAAAAATCCTTATAATTACCTTGTAAACTTTC
TTTGATTTTTTTTCAAATTTAGGAAGAATGCTAAACACGGACATACTCCA
GTTAGGAACAATTTTTTACCAGGGAAATGACAAAATGATAAGTGCCATAA
CCTTATACATTTTGGCTAAAGTCTGCTTGAGTTTTTCACCTTGTAAGGTT
GGTGTGCCTTCTGGATTTGACACTAATATCAAACATTGACATCAATTCCA
GTCTTATTGACAGCAACTTAGAGGGAGTCATGCAGACATTTTTCTTGCCA
AAGTAAAGTGCTTGTTTAAACAAACTCCATTTTTAGGAATTTGCTGGATG
AAAGTGATTTTAACCTTGGAACTGATAAACGCCATCTTGTCTGAGTATCA
GTGAAATAAACATCAGTCTATCCTTAGAGCCTGACATGGAGGAGGAATGA
CATCTTAACTTCTTTAAACATCTCCAGAGTCAATAATAGAACAGTGTTGT
CTTTGTAAGTAGGATACTTTGAATCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACTTCAAATAAGAACAAGACAAGGTTGTCCA
CCCTCTCTGTGTCTATTCAATAAGTACTTGAAGTTCTAGCTGAAGCAACT
GAACAACTGAAGGAGATGAAGGAGACACAAATTGGAAACAAAGAAGTAAG
TGTATTTTTATTTGCAAGTGATATAATACTAAACATAATTTGCCACCAAA
ATTGTACCAGGAAGCTCCTATAGCTGATAAACAATTTTAACAAAGTGTTG
GATACAAGATGACAAACAGGCTGAAAAAGAAATCATGGAAACAACACCTT
TCATAATTGCCACTAAAATAAATAAATAAAATAAATATCGTGGGATAAAT
CTATCCAAGCAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTTTGAA
GAAAGAGACTGAAGAAGATGTCTGAAAATAGAAAGATTCCCCCATTGTCT
TAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGGTTG
GGGAGGAAAGGGTTTATTCAGCTTACATTTCTACATTGCTGTTCATCACC
AAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGCAGCAGGAGCTCATGC
AGAAGCCATGGAGGGATGTTCTTTACTGGCTTGCTTTCCCTGGCTTGCTC
AGTCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAG

Query= MSMg01no538_b07.b1 MSMg01no538_b07.b1 CHROMAT_FILE:
MSMg01no538_b07.b1 PHD_FILE: MSMg01no538_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:39 2005
         (689 letters)



>mm_chr4_21557812_21558901
          Length = 1090

 Score = 1305 bits (675), Expect = 0.0
 Identities = 684/687 (99%), Gaps = 1/687 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctctattgacagtacagtgactatttgatccctgctcccaatagtcaatatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggaattctctctattgacagtacagtgactatttgatccctgctcccaatagtcaatatt 831

                                                                       
Query: 64  atacaatagtccagggagtgatttgttttgtaggaatattggaactatctgcaacgaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 atacaatagtccagggagtgatttgttttgtaggaatattggaactatctgcaacgaaga 771

                                                                       
Query: 124 tggattttcctgtcttgctatgtgacatcttatgaacaaacaataaagaataataat-aa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 770 tggattttcctgtcttgctatgtgacatcttatgaacaaacaataaagaataataataaa 711

                                                                       
Query: 183 aaaatccttataattaccttgtaaactttctttgattttttttcaaatttaggaagaatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaaatccttataattaccttgtaaactttctttgattttttttcaaatttaggaagaatg 651

                                                                       
Query: 243 ctaaacacggacatactccagttaggaacaattttttaccagggaaatgacaaaatgata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ctaaacacggacatactccagttaggaacaattttttaccagggaaatgacaaaatgata 591

                                                                       
Query: 303 agtgccataaccttatacattttggctaaagtctgcttgagtttttcaccttgtaaggtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agtgccataaccttatacattttggctaaagtctgcttgagtttttcaccttgtaaggtt 531

                                                                       
Query: 363 ggtgtgccttctggatttgacactaatatcaaacattgacatcaattccagtcttattga 422
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 530 ggtgtaccttctggatttgacactaatatcaaaccttgacatcaattccagtcttattga 471

                                                                       
Query: 423 cagcaacttagagggagtcatgcagacatttttcttgccaaagtaaagtgcttgtttaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cagcaacttagagggagtcatgcagacatttttcttgccaaagtaaagtgcttgtttaaa 411

                                                                       
Query: 483 caaactccatttttaggaatttgctggatgaaagtgattttaaccttggaactgataaac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caaactccatttttaggaatttgctggatgaaagtgattttaaccttggaactgataaac 351

                                                                       
Query: 543 gccatcttgtctgagtatcagtgaaataaacatcagtctatccttagagcctgacatgga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gccatcttgtctgagtatcagtgaaataaacatcagtctatccttagagcctgacatgga 291

                                                                       
Query: 603 ggaggaatgacatcttaacttctttaaacatctccagagtcaataatagaacagtgttgt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggaggaatgacatcttaacttctttaaacatctccagagtcaataatagaacagtgttgt 231

                                      
Query: 663 ctttgtaagtaggatactttgaatcgg 689
           |||||||||||||||||||||||||||
Sbjct: 230 ctttgtaagtaggatactttgaatcgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space:   733320
Effective search space used:   733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)