XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGAAATATCGAATGGCTGAAAAGTACCTGAAAAAATGCCCAGCACCCT
TAATAATCAGAAAAATGCAAATCAAAATAACCCTGTGATTCCACATCCTA
CCAGTCAGAATGGCTAAGTCCAAAAATTCAGGTGACAGCAGATGCCTGCA
AATATGTGAAGAAAGATAAACACTCCTCCACTGTTGGTGGGATTGCAAGC
TTGTAAAACCACTCTGGAAATCAGTCTGGTGGCTCCTCAGGAAATTGGAC
ATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTTCCAACCCTAAGAAGGACACATGCTCCATTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAAAACCCAGATGCCCCTCAGTAG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGCATGACTTTATAAAATTCCTAGGCATATGGGTGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACTCAATCACAAAAGAACTGACAGA
ATTTGTATTCACTGATAAGTGGATATTAGTCCAGAAATTTAGAATACCCA
AGATATAAGATACAATTTGCAAAACACAGGAAACTCAAGAAGAATGAAGA
CTAAAGTGTGGACACTTTGCCCCTTTTTTAGAATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAAATAAACTGAAAACTTTTTTTAAATGTATATA
TTTTTAATTATATGTGAAGGCCTCTCATCCTAGGCCTTTATTTGTGGAAC
TTTTGGATGACTTATCCTTTATCTTCACTTACAAAAGTCATTTATGGTCA
TTTACAAAGACCTATGTATGGTTAATAGTTAGCTTTTCAAGTTTTTTTTT
TTTTTTTAGAATTTTATCTACTTAAATTGATGTGATATATTGCTCATAAT
ATACGCATGTTTTCGTAAGTCTAACTAAGGTACGCCAAATTAATTGATCT
CATCATAGAATAAACATTTTTTATTACGTATTTTCCTCAATTACATTTCC
AATGCTATCCCAAAAGTCCCCCACACCCTCCCCCCCACTCCCCTACCCAC
CCATTCCCATTTTTTGGCTCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCCTGTCTAATGGGCCTCTCTTTCCAGTGTTGGGCGACTAGGCCATC
TTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGAGGTACTGGTTAGTT
CATAATGTTGCACCTACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACT
TTCTCTAGCTCCCCCATTGGGGGCCCTGTGATCCATCCAATAGTTGACTG
TGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCCTAGTCN

Query= MSMg01no538_f03.g1 MSMg01no538_f03.g1 CHROMAT_FILE:
MSMg01no538_f03.g1 PHD_FILE: MSMg01no538_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:57 2005
         (615 letters)



>mm_chr4_17200100_17201114
          Length = 1015

 Score = 1050 bits (543), Expect = 0.0
 Identities = 589/615 (95%), Gaps = 18/615 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaataaactgaaaactttttttaaatgtatatatttttaattatatgtgaaggcctct 60
           ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 caaaataaactgaaatctttttttaaatatatatatttttaattataagtgaaggcctct 260

                                                                       
Query: 61  catcctaggcctttatttgtggaacttttggatgacttatcctttatcttcacttacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctaggcctttatttgtggaacttttggatgacttatcctttatcttcacttacaaa 320

                                                                       
Query: 121 agtcatttatggtcatttacaaagacctatgtatggttaatagttagcttttcaagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcatttatggtcatttacaaagacctatgtatggttaatagttagcttttcaagtttt 380

                                                                       
Query: 181 ttttttttttttagaattttatctacttaaattgatgtgatatattgctcataatatacg 240
           |||         ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ttt---------agaattttatctacttaaattgatgtgatatattgctcataatatact 431

                                                                       
Query: 241 catgttttcgtaagtctaactaaggtacgccaaattaattgatctcatcatagaataaac 300
           |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 432 catgttttggtaagtctaactaaggtatgccaaattaattgatctcatcatagaattaac 491

                                                                       
Query: 301 attttttattacgtattttcctcaattacatttccaatgctatcccaaaagtcccccaca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 492 attttttattacgtattttcctcaattacatttccaatgctatcccaaaagtccccc--- 548

                                                                       
Query: 361 ccctcccccccactcccctacccacccattcccattttttggctctggcgttcccctgta 420
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ------cccccactcccctacccacccattcccattttttggctctggcgttcccctgta 602

                                                                       
Query: 421 ctggggcatataaagtttgcctgtctaatgggcctctctttccagtgttgggcgactagg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 603 ctggggcatataaagtttgcctgtctaacgggcctctctttccagtgttgggcgactagg 662

                                                                       
Query: 481 ccatcttttgatacatatgcagctagagtcaagagctctgaggtactggttagttcataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ccatcttttgatacatatgcagctagagtcaagagctctgaggtactggttagttcataa 722

                                                                       
Query: 541 tgttgcacctacagggttgcagatctctttagctccttggatactttctctagctccccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgttgcacctacagggttgcagatctctttagctccttggatactttctctagctccccc 782

                          
Query: 601 attgggggccctgtg 615
           |||||||||||||||
Sbjct: 783 attgggggccctgtg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)