XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCAA
GATATTTGATGTAAAATAAATTTTCATACTGCATTATCTTCTCAAATCAT
GATTCCCATTGCCCATTTTATTATCTTATATAAAAATATAAATATTATAA
AGTAAACACAATTTAGAATTAGTAATTTTTAATCAATATGGTACCTAGGA
GTGATGCTTTTATATGAATTCAAATTTATTTCCTAAATCTATTAATAAAT
AAATTTGTGTATATTAATTAATATGTTTTTAGATAATTATTTTATTTCCA
CTAATTTCTAAGATCATTGATTAAAATGATTATTTGGAGAAGGTTCTATT
TGCTTATTTTAGTTTTAAGAATAAACTCTTGCTATGTGCCTTAGGCTAAC
TTCAAACTCAGAATCACTTTGTTTTAAGTTTCAATAGCTAGTATTTTAAG
CATGTGCTAACATAATAAGACAGATGACTCTCAAAGTAATGTTTAAGCTG
CTAGAATGTTAAAAGAATTTTGAATAAATAGATATAACATGTATTTGAAA
CAGAAATCTACAAAGTTTTTGATAAAATGTTATTTACCTTTAGAAGACAA
TGAAACATAAACTTTTAATATATAGTAAATTGAGAAAAGATATATAAAAT
CAATTATTTGGTTACATGCAAATAGAAATGGTGACTATTAAATGTATGCA
CTATTTTCTAATATTTATACAAGGTTGGTTCAAAGTAAAAAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAAATAGCGACATT
AAAAATGGGGCTCAGAGATAAGATTTTGCTGAAAGGACCCAGATATGGCT
GTCTCTTGGGAGACTGTGCCGGGGCTGGCAAACACAGAAGTGGATGATCA
CAGTCAGCTATTGGATGGATCACAGGGCCCCAAATGGAGGAGCTAGAAAA
AGTACCCAAGGAGCTGAAGGGATCTGCAATCCTATAGTTGGAACAAAAAT
ATGAAATAACCAAAACCCTCTGGAGCTTGTGTCTCTAGCTGCATATGTAT
CAGAAGATGGCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGTTGT
GCAAACTTTATATTCCTCAATTCAGGGGAATGCCAGGGCCAAGAAGTGGG
AGTGGGTGTGTAGGTGAGTGGGTGGGGGANCNNNNNNTTTTCTTNTTTTC
NTTTCTTTGTTTCTTTCTTTTTTTTACTCTTTACTTATTTCGTTACGCCA
CCTATTATTGTTTTATCTTGGATTGAATTGTTTTGTCGGTATTTTATTCT
TATGTTTTTTGTGCTTTTGTTACTTCCCATTATTTCTAATTTTTCCCTTT
TTCCCCCTCTTTTTTTCTTTTATTCCCTTTCCCCCATCTTTTTTTGTTTG
TTCTCTCTTTTTTCATTTCTCTCTCCTTCTACTGCCTTTTTTTTTTTTCC
GCTCTTTTTTA

Query= MSMg01no538_m19.b1 MSMg01no538_m19.b1 CHROMAT_FILE:
MSMg01no538_m19.b1 PHD_FILE: MSMg01no538_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:32 2005
         (708 letters)



>mm_chr4_17142404_17143511
          Length = 1108

 Score =  826 bits (427), Expect = 0.0
 Identities = 457/467 (97%)
 Strand = Plus / Plus

                                                                       
Query: 242 ttttagataattattttatttccactaatttctaagatcattgattaaaatgattatttg 301
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 ttttagataattgttttatttccactaatttctaagatcattgattaaaataattatttg 501

                                                                       
Query: 302 gagaaggttctatttgcttattttagttttaagaataaactcttgctatgtgccttaggc 361
           ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||
Sbjct: 502 gagaaggttctatttgcttattttagttttaagaataaacttttgctatgcaccttaggc 561

                                                                       
Query: 362 taacttcaaactcagaatcactttgttttaagtttcaatagctagtattttaagcatgtg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taacttcaaactcagaatcactttgttttaagtttcaatagctagtattttaagcatgtg 621

                                                                       
Query: 422 ctaacataataagacagatgactctcaaagtaatgtttaagctgctagaatgttaaaaga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctaacataataagacagatgactctcaaagtaatgtttaagctgctagaatgttaaaaga 681

                                                                       
Query: 482 attttgaataaatagatataacatgtatttgaaacagaaatctacaaagtttttgataaa 541
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attttgaataaataaatataacatgtatttgaaacagaaatctacaaagtttttgataaa 741

                                                                       
Query: 542 atgttatttacctttagaagacaatgaaacataaacttttaatatatagtaaattgagaa 601
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgttatttacctttataagacaatgaaacataaacttttaatatatagtaaattgagaa 801

                                                                       
Query: 602 aagatatataaaatcaattatttggttacatgcaaatagaaatggtgactattaaatgta 661
           ||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 802 aagatatataaaatcaattatttagttaaatgcaaatagaaatggtaactattaaatgta 861

                                                          
Query: 662 tgcactattttctaatatttatacaaggttggttcaaagtaaaaaat 708
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tgcactattttctaatatttatacaaggttggttcaaagtaaaaaat 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)