BAC Information

Click to search

BAC

Clone NameMSMg01-538P08
Chromosome4 (Build37)
Map Location 129,558,199 - 129,705,137
singlet/doubletdoublet
Overlap geneLOC622469, LOC622480, 1700003M07Rik, Bai2
Upstream geneTrim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2
Downstream geneCol16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538P08.T7 (MSMg01no538_p08.b1)MSMg01-538P08.TJ (MSMg01no538_p08.g1)
ACCAG605564AG605565
length739744
length of high quality
(start - end)		671 (62 - 732)627 (68 - 694)
definitionCHROMAT_FILE: MSMg01no538_p08.b1 PHD_FILE: MSMg01no538_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:44 2005CHROMAT_FILE: MSMg01no538_p08.g1 PHD_FILE: MSMg01no538_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,558,199 - 129,558,867)(129,704,511 - 129,705,137)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAC
CCCCGCAAAAAATACTCCAGGAATGAAGACTGAGCGAAGCAGAAGACACG
GGGCCATTCCACAGGGCTGCACAGGGCCATTCCACAGGGCTCCCTCAACC
TCCCCTCACTGCCTACCCGTTCTCTAATAAGTCCAGAAATTCGGGCAGGT
GAGGAATGGACCCGTCCGATTCATTTTCTTTCCTCTTATCTCTTTGGGTT
TATTTATTTTTTGAGATAAGATCTCCCTCTGGCTTTGCTGGATCTTTCTA
TTAGACCAGGCTGGTCTAGAATTCACAGAGATCTGCCTGAACCTCACCAA
ACTCAGCCCTCAGTCCAGGGCTTACCCCAATTCTGCCTTAGTTCAAACTA
CTATTGTCCCAGCCGTTCTACAGCAGCAGCTCCTGACTGGTCTCACTGCT
TCCTTTTACTTGTCTTCTGTCTGTCTGCCTGCCTGCCTGCCTGCCTGTCT
GTCTGTCAGTGTGTCTGTGTGTCTGTCTTCTGTGCGCATGTGTCTAAGTA
CCCTCACACAGATGCCACGTGTGGAGGTCAGAGGAGAGCTCCTAGGGGCG
GATTGCTCTCAGTCACGTCTGCCTTGGGGATTGAACTCAGGCTGTCAAGC
TCGGCAGCAAGCCCCCTTACCTCCTGAGCCATCTCATCCACCCTCTGTTT
CTTTTCTTACCAGCCACATCCTATTTTTGGGCCAGCAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTTCAGCGTCTACAGCAGGCCCTGAGTTTTC
TTTTCAAAGCTTTGTGTCAGAACCTGTCTCCACTGCTTTCATTTCTTCCC
CTCCCACTTGCTCAACAGCCCCACTCCGACCCAGCTCCCTGCTGCCATGT
CGCTGACTAGCCAGTTCCCTCCTGAGTTCCAGCCCTGTGTCCAACCGCCT
ACCTTCTCCCAATGTCTTCCCCTTAAGTATCTGAAAGTTAACATGCCCAA
GGCCAAATGCTAAGCCAGCGGCATGGTCATCTCTCCGGGGGGCCAAGAGA
GATGCTCAGGGACCAGGCTCTTTTCCTCACGCCAGCCACAGGAAGGGGCA
GAGTTCTGCCTGTGCATGCACACAGACCACATTTCTCCTCAGTGGAGGTC
CCCACAAAGACTCCTTCCTGTGGATGGCTTCTTTGTTAGTCTCTCCGCAG
CTACCCCCACTCTTTAGTGTCCCCCAACTTATTTCTCAGTCATGCAGAGA
AACCCTGTGAATACCAAAATGCCTTCATGCTGAGCCTCTGCTGGCATAAA
ACCCCCCCGCCCCCCCCCCGGCTTCCCACTAACAACCCAAACCCTCAGCT
GGGTTGCTCTTGCCCTACACATTTTGTGTGTATCTTTGGGGACTAAGGGG
TTAATAGTCTTACTGAAGCAGGTGGCCTTTAGTGAGTAAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_p08.b1 MSMg01no538_p08.b1 CHROMAT_FILE:
MSMg01no538_p08.b1 PHD_FILE: MSMg01no538_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:44 2005
         (671 letters)



>mm_chr4_129557999_129559069
          Length = 1071

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactccaggaatgaagactgagcgaagcagaagacacggggccattccacagggctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactccaggaatgaagactgagcgaagcagaagacacggggccattccacagggctgca 260

                                                                       
Query: 61  cagggccattccacagggctccctcaacctcccctcactgcctacccgttctctaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggccattccacagggctccctcaacctcccctcactgcctacccgttctctaataag 320

                                                                       
Query: 121 tccagaaattcgggcaggtgaggaatggacccgtccgattcattttctttcctcttatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagaaattcgggcaggtgaggaatggacccgtccgattcattttctttcctcttatct 380

                                                                       
Query: 181 ctttgggtttatttattttttgagataagatctccctctggctttgctggatctttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgggtttatttattttttgagataagatctccctctggctttgctggatctttctat 440

                                                                       
Query: 241 tagaccaggctggtctagaattcacagagatctgcctgaacctcaccaaactcagccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaccaggctggtctagaattcacagagatctgcctgaacctcaccaaactcagccctc 500

                                                                       
Query: 301 agtccagggcttaccccaattctgccttagttcaaactactattgtcccagccgttctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtccagggcttaccccaattctgccttagttcaaactactattgtcccagccgttctac 560

                                                                       
Query: 361 agcagcagctcctgactggtctcactgcttccttttacttgtcttctgtctgtctgcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagcagctcctgactggtctcactgcttccttttacttgtcttctgtctgtctgcctg 620

                                                                       
Query: 421 cctgcctgcctgcctgtctgtctgtcagtgtgtctgtgtgtctgtcttctgtgcgcatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgcctgcctgcctgtctgtctgtcagtgtgtctgtgtgtctgtcttctgtgcgcatgt 680

                                                                       
Query: 481 gtctaagtaccctcacacagatgccacgtgtggaggtcagaggagagctcctaggggcgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctaagtaccctcacacagatgccacgtgtggaggtcagaggagagctcctaggggcgg 740

                                                                       
Query: 541 attgctctcagtcacgtctgccttggggattgaactcaggctgtcaagctcggcagcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgctctcagtcacgtctgccttggggattgaactcaggctgtcaagctcggcagcaag 800

                                                                       
Query: 601 cccccttacctcctgagccatctcatccaccctctgtttcttttcttaccagccacatcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccccttacctcctgagccatctcatccaccctctgtttcttttcttaccagccacatcc 860

                    
Query: 661 tatttttgg 669
           |||||||||
Sbjct: 861 tatttttgg 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_p08.g1 MSMg01no538_p08.g1 CHROMAT_FILE:
MSMg01no538_p08.g1 PHD_FILE: MSMg01no538_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:44 2005
         (627 letters)



>mm_chr4_129704164_129705190
          Length = 1027

 Score = 1212 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttcagcgtctacagcaggccctgagttttcttttcaaagctttgtgtcagaacctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 accttcagcgtctacagcaggccctgagttttcttttcaaagctttgtgtcagaacctgt 915

                                                                       
Query: 61  ctccactgctttcatttcttcccctcccacttgctcaacagccccactccgacccagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ctccactgctttcatttcttcccctcccacttgctcaacagccccactccgacccagctc 855

                                                                       
Query: 121 cctgctgccatgtcgctgactagccagttccctcctgagttccagccctgtgtccaaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cctgctgccatgtcgctgactagccagttccctcctgagttccagccctgtgtccaaccg 795

                                                                       
Query: 181 cctaccttctcccaatgtcttccccttaagtatctgaaagttaacatgcccaaggccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cctaccttctcccaatgtcttccccttaagtatctgaaagttaacatgcccaaggccaaa 735

                                                                       
Query: 241 tgctaagccagcggcatggtcatctctccggggggccaagagagatgctcagggaccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgctaagccagcggcatggtcatctctccggggggccaagagagatgctcagggaccagg 675

                                                                       
Query: 301 ctcttttcctcacgccagccacaggaaggggcagagttctgcctgtgcatgcacacagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctcttttcctcacgccagccacaggaaggggcagagttctgcctgtgcatgcacacagac 615

                                                                       
Query: 361 cacatttctcctcagtggaggtccccacaaagactccttcctgtggatggcttctttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cacatttctcctcagtggaggtccccacaaagactccttcctgtggatggcttctttgtt 555

                                                                       
Query: 421 agtctctccgcagctacccccactctttagtgtcccccaacttatttctcagtcatgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agtctctccgcagctacccccactctttagtgtcccccaacttatttctcagtcatgcag 495

                                                                       
Query: 481 agaaaccctgtgaataccaaaatgccttcatgctgagcctctgctggcataaaacccccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaaaccctgtgaataccaaaatgccttcatgctgagcctctgctggcataaaacccccc 435

                                                                       
Query: 541 cgccccccccccggcttcccactaacaacccaaaccctcagctgggttgctcttgcccta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgccccccccccggcttcccactaacaacccaaaccctcagctgggttgctcttgcccta 375

                                      
Query: 601 cacattttgtgtgtatctttggggact 627
           |||||||||||||||||||||||||||
Sbjct: 374 cacattttgtgtgtatctttggggact 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |