GCGCTTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGGTTTCCTCATCTCCTGCAGATCATAAGCCAAGTCTTT
TACTTTACGTATCAATCCAGTCATTTACTCCGGGTTTCCTTTTGATTATT
CTATGAATCAATATCATGTGACCTCAGCCCCTTAATTCTTAGGAGACAGT
AAGCTAGCATTTTCTTTTAACATTACAAAAGAATTCAGAGATCTGAGTGC
CTCTTTTATGAAAATGCTAAACTACTTGGGCTAGACTCTTTCCTGAAATT
ACATTTCTACCATACCCGGGCCTAAGCTTGCTCTTTCCCAAGCTGATTCA
GAACTCAGGAATTTGTCTGACTTTGTAAGCATATACAAACAAACAAACAA
ACAAACAAAATTTTAGCTAGGTGGGATCTCCTGCCATCATCACACCCTAA
ATCTCTTTCTCTCCTTCCTTAGTGTCTTTCTGATGAGTTAGTTAGCTCAT
AGTATTGCTGTCTCTATTCCTTTAGATTTGAGAAGCTCCTCCTATAATTC
ATATTGCATCCTTATTTTTTGCATAGATGAGAAATTATATATTTTTGAAC
TCATGTTTTAGAATTCTTTTTCACAGCCTTAAGGGCTGTCCTGAAGACCC
CAGCTTTTACCATTTTGCTGAGACATTAGCCACACCTTCACCTCCCAGAC
TCATGCTGTCTCAGATTATCATGGAGTCATTATCATTAATAGGGAGGACA
TTCCT

GCTATTNNTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGACAAAAATACC
CTAAATTCCAGAATTCAGAATCTAGGGGACTAGTAAAATTAGTAGAATTT
ATTATAAAATATAAAGATTGAATCAGTTGTTCCAATTATTACTTCTAAAG
AGTAAATTTCTAAAGCTTAATAGAGTTTCCCTGGTAAAAGATATTACCTC
CATATTCCACCATCTTTTACCATGAGACATTCAGGCTTTTCATTTCAGAG
TGCTGGCACTGATTTGATAGATATTTTCCCCACCCCAAAAGGCTTGGTAA
GGGCAGCTAGTACTGATTATCCCATTTGTAAACCAAGGGGTAACAAGAAA
TTTCTTTTGTGACGGATTAATTTGCTTCTTGAGCTAGCTCCTGAGTTCTG
AACACATGTATGAATCTGTGTTGTTATGCCTTAGAACCCACAGAAAACAC
TACGACTACTGCCATAATCTGCATGTGTTCTTTCCTATGTATGCTATTTT
CAGAGATTGTAATATATTCTCAGACACAACTGCCGTTCTGAAGGTATCCC
TATATTGTCCATGTGGTGGTTCCTCAAGAAAGAATGTCATCCTGTGCCTT
CATAGAGATCAGCCTACTTCCACACCCTACCACCCATGACAGTGGTCATG
AATCT

Query= MSMg01no540_a05.g1 MSMg01no540_a05.g1 CHROMAT_FILE:
MSMg01no540_a05.g1 PHD_FILE: MSMg01no540_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:09 2005
         (621 letters)



>mm_chr4_39194729_39195748
          Length = 1020

 Score =  650 bits (336), Expect = 0.0
 Identities = 363/372 (97%), Gaps = 1/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagacaaaaataccctaaattccagaattcagaatctaggggactagtaaaattagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagacaaaaataccctaaattccagaattcagaatctaggggactagtaaaattagta 260

                                                                       
Query: 61  gaatttattataaaatataaagattgaatcagttgttccaattattacttctaaagagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttattataaaatataaagattgaatcagttgttccaattattacttctaaagagta 320

                                                                       
Query: 121 aatttctaaagcttaatagagtttccctggtaaaagatattacctccatattccaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttctaaagcttaatagagtttccctggtaaaagatattacctccatattccaccatc 380

                                                                       
Query: 181 ttttaccatgagacattcaggcttttcatttcagagtgctggcactgatttgatagatat 240
           |||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||
Sbjct: 381 ttttaccatgagacatccaggcttttcatttcagagtgctggcaccaatttggtagatat 440

                                                                       
Query: 241 tttccccaccccaaaaggcttggtaagggcagctagtactgattatcccatttgtaaacc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tt-ccccaccccaaaaggcttggtaagggcagctagtactgattatcccatttgtaaacc 499

                                                                       
Query: 301 aaggggtaacaagaaatttcttttgtgacggattaatttgcttcttgagctagctcctga 360
           || |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||
Sbjct: 500 aaagggtaacaagaaatttcttttgtgacagaagaatttgcttcttgagctagctcctga 559

                       
Query: 361 gttctgaacaca 372
           ||||||||||||
Sbjct: 560 gttctgaacaca 571



 Score =  248 bits (128), Expect = 1e-69
 Identities = 163/176 (92%), Gaps = 4/176 (2%)
 Strand = Plus / Minus

                                                                       
Query: 360 agttctgaacacatgtatgaatctgtgttgttatgccttagaacccacagaaaacacta- 418
           |||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||| 
Sbjct: 814 agttctgaacacacatatgaatc--tgttgttatgccttagaacccacagaaaacactac 757

                                                                       
Query: 419 -cgactactgccataatctgcatgtgttctttcctatgtatgctattttcagagattgta 477
            |||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||
Sbjct: 756 ccgactactgccataatctgcatgtattctttcctgtgtgtgctattttcggagattgta 697

                                                                   
Query: 478 atatattctcagacacaactgccgttctgaaggtatccctatattgtccatgtggt 533
           ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct: 696 atatattctcagacacatctgccgttctgaaggtatccctatattttccacgtggt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)