Query= MSMg01no540_a16.b1 MSMg01no540_a16.b1 CHROMAT_FILE:
MSMg01no540_a16.b1 PHD_FILE: MSMg01no540_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:11 2005
(710 letters)
>mm_chr4_77131843_77132952
Length = 1110
Score = 959 bits (496), Expect = 0.0
Identities = 545/568 (95%), Gaps = 12/568 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggacagccagcgctacacagagaaaccctggtctcgaaaaaacaaaaaacaa 64
|||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct: 560 gaattccaggacagccagggctacacagagaaaccct-gtctcgaacaaacaaaaaacaa 502
Query: 65 aacaaaacaaaacaaaacaaaaaaacgaaaaagaaaaaagaaagggcaaaatgattatag 124
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaaac-----------aaaaaacgaaaaagaaaaaagaaagggcaaaatgattatag 453
Query: 125 ttagctcagaaccataagtctgtgcttaaaaaaattaaaaagataacttcacagatttat 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 452 ttagctcagaaccataagtctgtgtttaaaaaaattaaaaagataacttcacagatttat 393
Query: 185 ttacctccatcaaactaaagatttctcagccaataagcagaagtctaaaataatggggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttacctccatcaaactaaagatttctcagccaataagcagaagtctaaaataatggggaa 333
Query: 245 tttggggcgtactcaatagagttcatctttttcctatctgccttaagtttctattgctgt 304
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct: 332 tttggggcgtactcaatagagttcatcttttgcctacctgccttaagtttctattgttgt 273
Query: 305 gataaacaccattaccataagtaacttggggaaaaaaaggtttcattggctatcacatat 364
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 272 gataaacaccattaccataagtaacttggggaaaaaagggattcattggctatcacatat 213
Query: 365 tcaactacaggctgaagtcagagaagtcagggagaatatgaactcaaaacaggagcctgg 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 212 tcaactacaggctgaagtcagagaagtcagggagaatatgaacttaaaacaggagcctgg 153
Query: 425 agccggcaactgaaacagtagccattaaacaaggctgtttattggctggctcccctgact 484
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 152 agccggcacctgaaacagtagccattatacaaggctgtttattggctggctcccctgact 93
Query: 485 tgctcagtctgcttcccagaaccaccagcttagggtttgcaccacccatggtgggcttgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tgctcagtctgcttcccagaaccaccagcttagggtttgcaccacccatggtgggcttgg 33
Query: 545 ccaacactgttcaccagtcaagaaaatg 572
||||||||||||||||||||||||||||
Sbjct: 32 ccaacactgttcaccagtcaagaaaatg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no540_a16.g1 MSMg01no540_a16.g1 CHROMAT_FILE:
MSMg01no540_a16.g1 PHD_FILE: MSMg01no540_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:12 2005
(307 letters)
>mm_chr4_76991297_76992003
Length = 707
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Plus
Query: 1 catgttatcaatgaaaattaagttaacaggctttgtgtgtttctcaattacttagcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttatcaatgaaaattaagttaacaggctttgtgtgtttctcaattacttagcagtt 260
Query: 61 aataaatagctttccatcatattgtaaactgcaccacagttgaattagtaatatagcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaatagctttccatcatattgtaaactgcaccacagttgaattagtaatatagcctc 320
Query: 121 tctatgatatcacctgaaccttaattcaagagcagtggcatggtatctatatcagaaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgatatcacctgaaccttaattcaagagcagtggcatggtatctatatcagaaatc 380
Query: 181 aataaaaacacattttcttgaagttcatttttatgacaatcaagctaaataaaagtcaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aataaaaacacattttcttgaagttcatttttatgacaatcaagctaaataacggtcaat 440
Query: 241 tatagaaattttatagaataaaccaatgtaaacattcaaagtagactgataaagtacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagaaattttatagaataaaccaatgtaaacattcaaagtagactgataaagtacttt 500
Query: 301 tccattg 307
|||||||
Sbjct: 501 tccattg 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
