MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-540B17
Chromosome	4 (Build37)
Map Location	154,159,909 - 154,160,407
singlet/doublet	singlet
Overlap gene	none
Upstream gene	BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream gene	B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	BC039966 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407793 MGI:3039570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	A430005L14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97159 MGI:2140680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dffb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13368 MGI:1196287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC046331 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230967 MGI:2687282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72946 MGI:1920196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1190007F08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68859 MGI:1916109
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381580 MGI:2685881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trp73 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22062 MGI:1336991
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59002 MGI:1891749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1200015A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67808 MGI:1915058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Megf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230971 MGI:1919351
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 114 ESTs, 4 Proteins

name	Arhgef16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230972 MGI:2446219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 47 ESTs, 7 Proteins

name	Prdm16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70673 MGI:1917923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043342 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042178 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs

name	Actrt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73353 MGI:1920603
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230396O12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242800 MGI:2445205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmel1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27390 MGI:1351603
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810405K02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66469 MGI:1913719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfrsf14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230979 MGI:2675303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hes5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15208 MGI:104876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pank4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269614 MGI:2387466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043358 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Plch2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269615 MGI:2443078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668173 MGI:2684988
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rer1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67830 MGI:1915080
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Morn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76866 MGI:1924116
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ski (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20481 MGI:98310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610002J02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67513 MGI:1914763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkcz (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18762 MGI:97602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gabrd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14403 MGI:95622
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010015L04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:544678 MGI:1917130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69671 MGI:1916921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 1 Protein

name	Gnb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14688 MGI:95781
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nadk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192185 MGI:2183149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530082C11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320541 MGI:2444240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc2l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12537 MGI:88353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmp23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26561 MGI:1347361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mib2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76580 MGI:2679684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B930041F14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230991 MGI:2444790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ssu72 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68991 MGI:1916241
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG381582 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381582 MGI:3648074
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Atad3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108888 MGI:1919214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vwa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246228 MGI:2179729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230069A22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320587 MGI:2444329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC039966 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253335 GeneID:407793 MGI:3039570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : cDNA sequence BC039966 transcript_id : XM_001477621.1

name	A430005L14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802941 GeneID:97159 MGI:2140680
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A430005L14 gene transcript_id : NM_175287.3

name	Dffb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802948 GeneID:13368 MGI:1196287
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA fragmentation factor, beta subunit transcript_id : NM_007859.3

name	BC046331 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343602 GeneID:230967 MGI:2687282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC046331 transcript_id : NM_177673.2

name	Lrrc47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41152115 GeneID:72946 MGI:1920196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 47 transcript_id : NM_201226.1

name	Ccdc27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802895 GeneID:381580 MGI:2685881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 27 transcript_id : NM_001033455.2

name	Trp73 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375138 GeneID:22062 MGI:1336991
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 73 transcript_id : NM_011642.2

name	Wdr8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778725 GeneID:59002 MGI:1891749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 8 transcript_id : NM_021499.2

name	1200015A19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71795665 GeneID:67808 MGI:1915058
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200015A19 gene transcript_id : NM_026388.2

name	Megf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372857 GeneID:230971 MGI:1919351
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 114 ESTs, 4 Proteins product : multiple EGF-like-domains 6, transcript variant 1 transcript_id : XM_620148.3

name	Arhgef16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372806 GeneID:230972 MGI:2446219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 47 ESTs, 7 Proteins product : Rho guanine nucleotide exchange factor (GEF) 16, transcript variant 5 transcript_id : XM_902459.2

name	Prdm16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107622 GeneID:70673 MGI:1917923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PR domain containing 16 transcript_id : NM_027504.3

name	LOC100043342 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253362 GeneID:100043342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043342 transcript_id : XM_001480354.1

name	LOC100042178 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253337 GeneID:100042178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs product : hypothetical protein LOC100042178 transcript_id : XM_001477690.1

name	Actrt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982618 GeneID:73353 MGI:1920603
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-related protein T2 transcript_id : NM_028513.2

name	B230396O12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098156 GeneID:242800 MGI:2445205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230396O12 gene transcript_id : NM_172878.2

name	Mmel1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305476 GeneID:27390 MGI:1351603
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane metallo-endopeptidase-like 1 transcript_id : NM_013783.1

name	2810405K02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801670 GeneID:66469 MGI:1913719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810405K02 gene transcript_id : NM_025582.3

name	Tnfrsf14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341490 GeneID:230979 MGI:2675303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) transcript_id : NM_178931.2

name	Hes5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801760 GeneID:15208 MGI:104876
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hairy and enhancer of split 5 (Drosophila) transcript_id : NM_010419.3

name	Pank4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366380 GeneID:269614 MGI:2387466
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pantothenate kinase 4 transcript_id : NM_172990.2

name	LOC100043358 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253364 GeneID:100043358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100043358 transcript_id : XM_001480381.1

name	Plch2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121583636 GeneID:269615 MGI:2443078
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase C, eta 2 transcript_id : NM_175556.3

name	Pex10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109150413 GeneID:668173 MGI:2684988
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome biogenesis factor 10 transcript_id : NM_001042407.1

name	Rer1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385881 GeneID:67830 MGI:1915080
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) transcript_id : NM_026395.1

name	Morn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487377 GeneID:76866 MGI:1924116
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MORN repeat containing 1 transcript_id : NM_001081100.1

name	Ski (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113205054 GeneID:20481 MGI:98310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sloan-Kettering viral oncogene homolog transcript_id : NM_011385.2

name	2610002J02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381159 GeneID:67513 MGI:1914763
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610002J02 gene transcript_id : NM_001033134.2

name	Prkcz (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872199 GeneID:18762 MGI:97602
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, zeta transcript_id : NM_008860.2

name	Prkcz (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872204 GeneID:18762 MGI:97602
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, zeta transcript_id : NM_001039079.1

name	Gabrd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679912 GeneID:14403 MGI:95622
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, subunit delta transcript_id : NM_008072.1

name	2010015L04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354426 GeneID:544678 MGI:1917130
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010015L04 gene transcript_id : NM_177674.4

name	Tmem52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372812 GeneID:69671 MGI:1916921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 1 Protein product : transmembrane protein 52, transcript variant 1 transcript_id : XM_131826.3

name	Gnb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111186467 GeneID:14688 MGI:95781
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, beta 1 transcript_id : NM_008142.3

name	Nadk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20149759 GeneID:192185 MGI:2183149
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NAD kinase transcript_id : NM_138671.1

name	A530082C11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922680 GeneID:320541 MGI:2444240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530082C11 gene transcript_id : NM_177186.4

name	Cdc2l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350164 GeneID:12537 MGI:88353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 2-like 1 transcript_id : NM_007661.3

name	Mmp23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129979 GeneID:26561 MGI:1347361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 23 transcript_id : NM_011985.2

name	Mib2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347530 GeneID:76580 MGI:2679684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mindbomb homolog 2 (Drosophila) transcript_id : NM_145124.2

name	B930041F14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248519 GeneID:230991 MGI:2444790
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B930041F14 gene transcript_id : NM_178699.3

name	Ssu72 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803020 GeneID:68991 MGI:1916241
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) transcript_id : NM_026899.2

name	EG381582 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372815 GeneID:381582 MGI:3648074
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : predicted gene, EG381582 transcript_id : XM_358624.4

name	Atad3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803434 GeneID:108888 MGI:1919214
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase family, AAA domain containing 3A transcript_id : NM_179203.2

name	Vwa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347205 GeneID:246228 MGI:2179729
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : von Willebrand factor A domain containing 1 transcript_id : NM_147776.3

name	A230069A22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802489 GeneID:320587 MGI:2444329
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A230069A22 gene transcript_id : NM_001033394.2

name	BC039966 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253336 GeneID:407793 MGI:3039570
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477671.1

name	A430005L14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424952 CCDS:CCDS19003.1 GeneID:97159 MGI:2140680
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC97159 protein_id : NP_780496.1

name	Dffb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542553 CCDS:CCDS19004.1 GeneID:13368 MGI:1196287
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IDA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006309 - DNA fragmentation during apoptosis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : DNase inhibited by DNA fragmentation factor; DNA fragmentation factor, 40 kD, beta subunit; caspase-activated DNase product : DNA fragmentation factor, beta subunit protein_id : NP_031885.2

name	BC046331 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244100 CCDS:CCDS19005.1 GeneID:230967 MGI:2687282
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016595 - glutamate binding [Evidence ISS]; GO:0016594 - glycine binding [Evidence ISS]; GO:0016596 - thienylcyclohexylpiperidine binding [Evidence ISS] codon_start : 1 note : likely ortholog of H. sapiens glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein product : glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein protein_id : NP_808341.1

name	Lrrc47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41152116 CCDS:CCDS19006.1 GeneID:72946 MGI:1920196
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : novel protein containing Leucine Rich Repeat domains product : leucine rich repeat containing 47 protein_id : NP_957678.1

name	Ccdc27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701967 CCDS:CCDS19008.1 GeneID:381580 MGI:2685881
definition	codon_start : 1 product : coiled-coil domain containing 27 protein_id : NP_001028627.1

name	Trp73 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794514 CCDS:CCDS19009.1 GeneID:22062 MGI:1336991
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence TAS]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence TAS]; GO:0030900 - forebrain development [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : transformation related protein 73 protein_id : NP_035772.1

name	Wdr8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778726 CCDS:CCDS19010.1 GeneID:59002 MGI:1891749
definition	codon_start : 1 product : WD repeat domain 8 protein_id : NP_067474.2

name	1200015A19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312776 CCDS:CCDS19011.1 GeneID:67808 MGI:1915058
definition	GO_function : GO:0042802 - identical protein binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : hypothetical protein LOC67808 protein_id : NP_080664.1

name	Megf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895993 GeneID:230971 MGI:1919351
definition	codon_start : 1 product : EGF-like-domain, multiple 3 isoform 1 protein_id : XP_620148.2

name	Arhgef16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372807 GeneID:230972 MGI:2446219
definition	codon_start : 1 product : hypothetical protein isoform 5 protein_id : XP_907552.2

name	Prdm16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107623 GeneID:70673 MGI:1917923
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : transcription factor MEL1 protein_id : NP_081780.3

name	LOC100043342 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253363 GeneID:100043342
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480404.1

name	LOC100042178 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253338 GeneID:100042178
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477740.1

name	Actrt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386316 CCDS:CCDS19014.1 GeneID:73353 MGI:1920603
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 note : actin related protein M2 (Arpm2) product : actin related protein M2 protein_id : NP_082789.1

name	B230396O12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098157 CCDS:CCDS19015.1 GeneID:242800 MGI:2445205
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242800 protein_id : NP_766466.2

name	Mmel1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305477 GeneID:27390 MGI:1351603
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005615 - extracellular space [Evidence TAS]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence ISS]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0004245 - neprilysin activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : neprilysin 2; NEPLP beta; NEPLP alpha; NEPLP gamma; soluble secreted endopeptidase product : mel transforming oncogene-like 1 protein_id : NP_038811.1

name	2810405K02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754130 CCDS:CCDS19016.1 GeneID:66469 MGI:1913719
definition	codon_start : 1 product : hypothetical protein LOC66469 protein_id : NP_079858.2

name	Tnfrsf14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725810 CCDS:CCDS19017.1 GeneID:230979 MGI:2675303
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0050798 - activated T cell proliferation [Evidence IDA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : herpes virus entry mediator product : tumor necrosis factor receptor superfamily member 14 protein_id : NP_849262.1

name	Hes5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754182 CCDS:CCDS19018.1 GeneID:15208 MGI:104876
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0042491 - auditory receptor cell differentiation [Evidence IMP]; GO:0042668 - auditory receptor cell fate determination [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IGI]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0048469 - cell maturation [Evidence IGI]; GO:0007275 - development [Evidence IEA]; GO:0045665 - negative regulation of neuron differentiation [Evidence IGI]; GO:0007399 - nervous system development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : hairy and enhancer of split 5 protein_id : NP_034549.1

name	Pank4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370494 CCDS:CCDS19019.1 GeneID:269614 MGI:2387466
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004594 - pantothenate kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0015937 - coenzyme A biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : pantothenate kinase 4 protein_id : NP_766578.1

name	LOC100043358 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253365 GeneID:100043358
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480431.1

name	Plch2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121583637 GeneID:269615 MGI:2443078
definition	GO_component : GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0004435 - phosphoinositide phospholipase C activity [Evidence IEA]; GO:0004629 - phospholipase C activity [Evidence IDA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0006629 - lipid metabolism [Evidence IEA]; GO:0030384 - phosphoinositide metabolism [Evidence IDA] codon_start : 1 note : phospholipase C eta2; phospholipase C-eta2 product : phospholipase C-like 4 protein_id : NP_780765.2

name	Pex10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109150414 CCDS:CCDS19021.1 GeneID:668173 MGI:2684988
definition	codon_start : 1 product : peroxisome biogenesis factor 10 protein_id : NP_001035866.1

name	Rer1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385882 CCDS:CCDS19022.1 GeneID:67830 MGI:1915080
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : RER1 homolog protein_id : NP_080671.1

name	Morn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487378 GeneID:76866 MGI:1924116
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA] codon_start : 1 product : MORN repeat containing 1 protein_id : NP_001074569.1

name	Ski (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113205055 CCDS:CCDS19024.1 GeneID:20481 MGI:98310
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0017053 - transcriptional repressor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030326 - embryonic limb morphogenesis [Evidence IMP] codon_start : 1 product : Sloan-Kettering viral oncogene homolog protein_id : NP_035515.2

name	2610002J02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701642 GeneID:67513 MGI:1914763
definition	codon_start : 1 product : hypothetical protein LOC67513 protein_id : NP_001028306.1

name	Prkcz (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872200 CCDS:CCDS19026.1 GeneID:18762 MGI:97602
definition	GO_component : GO:0045179 - apical cortex [Evidence IDA]; GO:0005938 - cell cortex [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004700 - atypical protein kinase C activity [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1; protein kinase C zeta subspecies product : protein kinase C, zeta isoform a protein_id : NP_032886.2

name	Prkcz (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872205 CCDS:CCDS19027.1 GeneID:18762 MGI:97602
definition	GO_component : GO:0045179 - apical cortex [Evidence IDA]; GO:0005938 - cell cortex [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004700 - atypical protein kinase C activity [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2; protein kinase C zeta subspecies product : protein kinase C, zeta isoform b protein_id : NP_001034168.1

name	Gabrd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679913 CCDS:CCDS19028.1 GeneID:14403 MGI:95622
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : gamma-aminobutyric acid (GABA-A) receptor, subunit delta protein_id : NP_032098.1

name	2010015L04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85662377 GeneID:544678 MGI:1917130
definition	codon_start : 1 product : hypothetical protein LOC544678 protein_id : NP_808342.2

name	Tmem52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20850871 GeneID:69671 MGI:1916921
definition	codon_start : 1 product : transmembrane protein 52 isoform 1 protein_id : XP_131826.1

name	Gnb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680045 CCDS:CCDS19030.1 GeneID:14688 MGI:95781
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] [Evidence IPI] GO_function : GO:0003924 - GTPase activity [Evidence ISS] GO_process : GO:0008283 - cell proliferation [Evidence IDA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS] [Evidence IDA]; GO:0007200 - G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [Evidence IDA]; GO:0007603 - phototransduction, visible light [Evidence ISS]; GO:0050909 - sensory perception of taste [Evidence IDA] codon_start : 1 product : guanine nucleotide-binding protein, beta-1 subunit protein_id : NP_032168.1

name	Nadk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149760 CCDS:CCDS19031.1 GeneID:192185 MGI:2183149
definition	GO_component : GO:0005829 - cytosol [Evidence ISS] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003951 - NAD+ kinase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0046034 - ATP metabolism [Evidence ISS]; GO:0008152 - metabolism [Evidence IEA]; GO:0016310 - phosphorylation [Evidence ISS] codon_start : 1 exception : mismatches in translation product : putative inorganic polyphosphate/ATP-NAD kinase protein_id : NP_619612.1

name	A530082C11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893193 GeneID:320541 MGI:2444240
definition	codon_start : 1 product : solute carrier family 35, member E2 protein_id : NP_796160.1

name	Cdc2l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33695123 CCDS:CCDS19033.1 GeneID:12537 MGI:88353
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0001824 - blastocyst development [Evidence IMP]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007088 - regulation of mitosis [Evidence IMP] codon_start : 1 note : cell division cycle 2-like 2; PITSLRE proteins; cell division cycle 2 homolog (S. pombe)-like 2; cell division cycle 2 homolog (S. pombe)-like 1 product : cell division cycle 2-like 1 protein_id : NP_031687.2

name	Mmp23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754710 CCDS:CCDS19034.1 GeneID:26561 MGI:1347361
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence ISS] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : cysteine array matrix metalloproteinase product : matrix metalloproteinase 23 protein_id : NP_036115.1

name	Mib2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347531 CCDS:CCDS19035.1 GeneID:76580 MGI:2679684
definition	GO_component : GO:0005769 - early endosome [Evidence IDA]; GO:0000151 - ubiquitin ligase complex [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0016567 - protein ubiquitination [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : dystrophin-like; zinc finger, ZZ type with ankyrin repeat domain 1 product : skeletrophin protein_id : NP_660106.2

name	B930041F14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248520 GeneID:230991 MGI:2444790
definition	codon_start : 1 product : hypothetical protein LOC230991 protein_id : NP_848814.2

name	Ssu72 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312173 CCDS:CCDS19036.1 GeneID:68991 MGI:1916241
definition	codon_start : 1 exception : mismatches in translation product : Ssu72 RNA polymerase II CTD phosphatase homolog protein_id : NP_081175.1

name	EG381582 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38079078 GeneID:381582 MGI:3648074
definition	codon_start : 1 product : similar to hCG19301 protein_id : XP_358624.1

name	Atad3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725845 CCDS:CCDS19037.1 GeneID:108888 MGI:1919214
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : AAA-ATPase TOB3 protein_id : NP_849534.1

name	Vwa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559909 CCDS:CCDS19039.1 GeneID:246228 MGI:2179729
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : von Willebrand factor A-domain containing 1 product : von Willebrand factor A domain-related protein protein_id : NP_680085.2

name	A230069A22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701895 CCDS:CCDS19040.1 GeneID:320587 MGI:2444329
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC320587 protein_id : NP_001028566.1

name	1190007F08Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253303 GeneID:68859 MGI:1916109
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1190007F08 gene transcript_id : XR_035126.1

clone name	MSMg01-353N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486J15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-086D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110M23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-326F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109P13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-540B17.T7 (MSMg01no540_b17.b1)	MSMg01-540B17.TJ (MSMg01no540_b17.g1)
ACC	AG606436	AG606437
length	740	739
length of high quality (start - end)	496 (59 - 554)	387 (73 - 459)
definition	CHROMAT_FILE: MSMg01no540_b17.b1 PHD_FILE: MSMg01no540_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:16 2005	CHROMAT_FILE: MSMg01no540_b17.g1 PHD_FILE: MSMg01no540_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:16 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGXXXXXXXXXXXXX XXXXXXXXTATATCTCGTCACTTGTGGCTGTGCGACCCTGGGACACTCTT GGAGTCTTTTTGGAACCCCGCCCCCTTTTCTCATGCTCAGAGCAGGGTCA CAAGTCTTAGTGACTGCTGGTGAAGCCTAAGACAAAACCCACTGCACCAG CAGCAGGACAGCAAAGAGCTAGCCGGCCACAGCAGGCTTTTACCAGCTTC GGGTTGTCCTCACTATGCTGGGACACTGAGCAGGACCTCAAAATAACATC CCTCATCCTGGCACCGACTTGCTGGTTGCTGGCTCAACTCAGGTTCTTTA GAACCTCCTTAGTCCCAGCCTCCCTCCCCCACTGCCCATGTCCCCCAAGG GCTTCCACAGTCCTCAAGGTACTCTCTGTTAACTGCTCTGAAACTCCAAC CCCAGGAATCTTGGGCCAGTGGATAGGTGACACAGCCAGGCTGGTGATCA GGAAGTGCCCCCCCCACACACTCTTAAAGGGACTTTAGGTGACCATTTGT GAGGCCCCAGATCAGGTCTCTATGCCACACAGAGCTTGACTGGACAACAA GGCTGAGGGAGATAGAACCTGGGCTCGCTGCAGAGATAGCCACTGGGCCA CCAGGCCCACTGACTCCCACCCTAACAGGCACTGATGCCCACAGTGCTCC CACTGAGGACAACTCCAGTGTCATGCCCCTGGAGCACGGA	ACTATGTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCATTTTTTAA TAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAATTTTTTTGTATAT ATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCC AATCTGTTGGTGGTCTTTTTGTCTTGACAGTGTCTTTTGCTTTATAGAAG CTTTGCAATTTTATGAGGTCCCATTTGTATTACGGAAAAGTAATTGTTGC TTCCTGTTATTTTTGTTGTTAGAGTTGGGATTCTGTTCTTGTGGCTATTT TCTTTTTTTTCTCTCTTTTCTTTTCTCTTTAATTTTCTCTCTCTCTCTCT TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTTCTTTTTTTCTACACAGGGTTTCTCTGTGTAGCCCTGGTTGT CCTGGANCTCATTCTGTAGACCAGGCTGGCCTCAAACGCAGAAATCTGCC TGCCTCTGCCTCCAAGGTCTGGGAGAAAAGGCGTGCGCCACCACTGCCTG GTGCGGATATTCTCTTTTAGGTTTCTTGAATTAATTTTCTTGCTTTTTCT AGGGGGGAACTCCTCTCCCTGGGTTGGGGTTTTCTCTTATTATCCTTTTG AAGGCTGGATTTTTTGGAAAGATTTTTGGCGAATTTGTC
quality values	Open. Hide. 6 6 6 7 13 17 37 30 25 21 19 15 15 27 28 29 26 22 30 24 31 34 47 33 33 33 33 33 28 27 11 10 8 9 8 9 12 13 14 19 28 22 24 24 35 35 39 29 36 36 36 37 33 36 36 36 37 37 24 23 10 10 10 13 10 10 11 11 19 24 32 37 37 35 43 39 48 57 57 57 57 57 48 48 48 43 43 43 47 43 57 42 42 34 36 36 36 43 39 39 43 43 68 43 44 39 39 43 48 59 68 68 54 48 44 39 44 46 43 43 43 46 46 59 54 54 54 57 48 47 41 41 42 42 48 48 43 43 40 40 44 44 50 48 48 47 43 40 39 39 39 48 48 57 57 48 39 39 43 43 44 41 41 34 32 23 16 10 10 9 9 9 15 15 22 30 34 47 47 59 44 43 43 43 57 57 59 48 48 48 48 57 57 57 57 48 43 43 43 43 48 48 48 48 48 47 48 48 48 48 57 54 54 57 59 59 59 59 59 59 59 59 43 43 47 44 43 43 46 47 44 44 59 57 59 59 59 59 59 57 57 57 57 57 41 47 57 57 57 43 43 44 57 59 59 59 47 47 57 57 48 50 50 57 59 59 59 68 68 68 57 57 54 57 57 54 50 50 50 43 43 43 43 43 43 43 50 47 47 47 54 57 57 68 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 57 57 57 57 48 48 48 48 57 57 59 54 54 48 59 59 59 59 59 59 59 59 59 46 36 39 39 39 43 34 41 30 40 43 59 59 48 48 47 59 59 57 57 57 57 57 57 59 59 59 59 59 59 41 41 41 41 41 41 39 41 44 59 59 59 59 59 47 47 37 39 35 25 25 17 15 15 26 29 37 43 47 57 59 57 57 48 57 57 54 57 68 44 44 43 46 48 46 42 46 46 43 43 47 47 48 54 59 59 48 59 59 59 47 54 54 59 59 59 59 59 59 59 68 68 59 59 48 48 48 48 57 57 57 59 43 43 37 37 36 43 43 39 39 36 36 37 37 37 37 37 37 41 43 43 43 31 31 35 36 43 41 41 40 40 48 48 59 59 41 59 39 32 32 23 23 28 37 39 43 44 48 48 48 48 38 38 36 36 33 37 37 37 37 37 37 37 35 31 28 39 43 41 37 37 32 32 30 37 39 48 47 43 41 41 41 43 43 59 44 29 35 32 37 37 34 34 39 40 39 39 34 34 26 31 35 36 59 47 43 43 30 24 12 12 14 17 23 21 15 15 21 25 22 11 12 14 24 22 34 33 36 36 37 34 29 22 24 24 22 19 12 11 21 27 26 37 37 29 29 16 16 15 17 22 30 21 21 16 17 17 17 17 28 25 25 24 24 20 30 22 28 19 24 17 26 23 27 23 25 22 22 31 34 23 20 11 11 11 20 22 19 11 11 11 11 11 19 12 19 17 27 32 25 25 29 29 21 16 15 18 16 23 13 14 11 12 12 12 20 19 24 30 23 19 19 22 20 22 28 23 29 32 24 13 13 14 12 10 12 14 14 16 23 25 18 16 14 12 12 15 19 28 37 36 35 35 37 35 24 25 13 12 11 12 12 9 9 9 9 10 10 10 10 14 11 9 9 9 17 16 18 11 19 22 30 23 24 19 16 18 15 19 8 8 8 8 8 8 9 9	Open. Hide. 6 6 6 6 8 9 9 9 15 3 0 3 9 12 14 25 24 23 26 24 19 28 27 32 32 41 44 39 39 30 25 10 9 6 6 6 6 6 6 6 8 8 8 8 11 14 14 12 12 15 25 25 59 59 44 34 27 9 8 8 8 6 6 6 8 9 8 19 13 15 19 18 37 28 28 23 28 24 32 32 37 53 57 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 50 50 50 48 48 29 46 46 36 36 50 57 68 68 68 68 68 68 68 59 57 57 52 52 57 57 57 52 50 50 50 50 50 51 57 68 68 68 51 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 47 47 33 24 20 12 11 11 11 12 12 30 19 15 6 6 6 6 9 18 23 38 27 27 14 14 23 30 33 32 30 19 19 24 24 35 35 43 37 37 21 14 10 15 15 14 18 30 30 30 14 16 3 0 3 15 12 11 12 15 18 25 11 11 10 15 10 10 10 10 12 12 15 25 30 16 16 10 12 8 11 9 10 10 10 10 9 9 9 18 18 22 19 21 31 31 23 32 28 37 29 33 19 19 17 19 13 11 11 9 14 10 10 10 11 11 12 19 15 12 10 10 10 10 21 15 12 9 9 12 17 19 12 10 9 9 9 9 10 10 14 11 10 10 11 10 14 13 19 13 13 12 10 8 8 8 8 8 8 8 8 17 15 8 8 8 11 13 18 11 14 16 13 15 11 8 8 10 9 12 14 16 13 10 8 10 10 10 12 16 13 13 17 13 10 10 12 16 14 11 8 8 9 8 8 8 8 8 10 8 9 10 13 10 11 9 8 10 10 10 9 8 8 8 8 8 8 19 23 9 9 9 9 8 11 24 19 10 8 8 8 6 6 8 12 12 13 16 13 10 8 8 8 8 8 9 10 13 15 11 9 9 9 9 10 12 10 12 9 12 8 10 10 8 8 8 6 6 8 8 8 6 7 10 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no540_b17.b1 MSMg01no540_b17.b1 CHROMAT_FILE:
MSMg01no540_b17.b1 PHD_FILE: MSMg01no540_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:16 2005
         (496 letters)



>mm_chr4_154159709_154160607
          Length = 899

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/500 (98%), Gaps = 5/500 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatctcgtcacttgtggctgtgcgaccctgggacactcttggagtctttttggaaccc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatct-gtcacttgtggctgtgcgaccctgggacactcttggagtctttttggaaccc 259

                                                                       
Query: 61  cgcccccttttctcatgctcagagcagggtcacaagtcttagtgactgctggtgaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 cgcccccttttctcatgctcagagcagggtcacaagtcttagtgactgctgttgaagcct 319

                                                                       
Query: 121 aagacaaaacccactgcaccagcagcaggacagcaaagagctagccggccacagcaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagacaaaacccactgcaccagcagcaggacagcaaagagctagccggccacagcaggct 379

                                                                       
Query: 181 tttaccagcttcgggttgtcctcactatgctgggacactgagcaggacctcaaaataaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttaccagcttcgggttgtcctcactatgctgggacactgagcaggacctcaaaataaca 439

                                                                       
Query: 241 tccctcatcctggcaccgacttgctggttgctggctcaactcaggttctttagaacctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccctcatcctggcaccgacttgctggttgctggctcaactcaggttctttagaacctcc 499

                                                                       
Query: 301 ttagtcccagcctccctcccccactgcccatgtcccccaagggcttccacagtcctcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttagtcccagcctccctcccccactgcccatgtcccccaagggcttccacagtcctcaag 559

                                                                       
Query: 361 gtactctctgttaactgctctgaaactccaaccccaggaatcttgggccagtggataggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtactctctgttaactgctctgaaactccaaccccaggaatcttgggccagtggataggt 619

                                                                       
Query: 421 gacacagccaggctggtgatcaggaagtgccccccccacacac----tcttaaagggact 476
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 620 gacacagccaggctggtgatcaggaagtgccccccccacacacacactcttaaagggact 679

                               
Query: 477 ttaggtgaccatttgtgagg 496
           ||||||||||||||||||||
Sbjct: 680 ttaggtgaccatttgtgagg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 899
Length adjustment: 10
Effective length of query: 486
Effective length of database: 889
Effective search space:   432054
Effective search space used:   432054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information