NATGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTACTTGAGTTGTAGAGAAGGGTTCATTTTCAGGATCATG
GGTGCTTCAAAGGTGTCCATTTCACTGAAAACCAAACAGAAACCAAAACC
AAACCAACAAAATCAAATAACCCATACCATCTTGGATGATAACTTAGAAA
ATCTAGTCTTGCATGCATCAATTTCTGGCAGCTCTGCTAGTGGCATAGTT
TCTTGCAGGTTAGCATCTGGATAGAGTTCCCCCTCAGCAGCTGCCATTGT
TTATATAACCCCCAAGAGATGCCTCTGATTCCTCCAAGTTTGAGTGGTTT
TCTGAAACTTAAGCATTTTGTTTACTTACAGAATCTTAACAAGCCCCTCT
CCAGAAAGGAACGCTTGAGACTGAGGACATAGCTACAATCGACTTCTATT
AATGTGGCTGTTTACTTTATATTGACATCTGCCTATTCTTACTTTGGATA
AACCTGTAGACACCAGATTGTTGGGCCACTTCATAAGAGCCTCTGGACTG
TTTTCTTACAGCCTGTGTTGTTATATTACTGTCAGCAATGGAACAGTTAG
TTCCTTGTACTTCTCAGTAGCACTCAGGGTTGACAGTCAAAAGTTTCAGA
CATTCTAGAGGGTGGGTAGTGGCATCTTATTGTGGATTAAGCTCTTGTCT
ATTTTACAGTCATTAATGTCAGATGTGTCCTTGTGTGCTTAG

ATCTAATAAGCGAAACAGAAGGCACAGTGTGTGGTTATTTCTCATCACAA
GGGAGCAGGCGGGGACAACAGCATTCACCCCCTAATCCGTTGGTCCCCGT
GTCTCTTTTTTACACAGCATATACAACAACAATACTATATTATATCTTTC
TCCCGAGCTGCGCACATAGAGGGACTACTAAGATAATTATTATCCCCGCC
GCAATACGAGACGTTCTAACGTAATCCCTATATATTATATTAAAGCTCAC
CTCGGTCCTGTGAGAGTCGCTGTTTGTATTCTCCCGCGTTTCGCCCCCAC
GATAAATCTCCGTGTGTTATATAAACATGAGAGATTAAGGAGATCTATTT
TATAAATTAATCTCCATAATTATACAATATGTNCTCACACTATTATATCT
GTGAAATAGCCGATCCGACCACACTAAACCCATAATCACTGAAATTATCA
TACGCCTCTCTCGCCAATAGCAACGATAAAATAAATCAANACCACCACCA
ATCCCAACGCAATAAACTCATATTAGTGAATAGTCCATGGTATATATTCC
TCTCGACGCAACGCAATTACCACTCTAATATTTATGATACATAATATCAC
GCATCGGTTGCACCTGACGGTTCCTCTCTAACACACCCATAATGTCCGTC
ACCAACCACCCGCAATCACATATTGATCAGTATATCTTACACATGAAAAT
ACCAAGAACATATAGTAGAAGCGTCGTAATGTACGGAGAATACGATATAG
CTAACTGAAGTAAAAGACAATCAATACAATAAATCTTAATCCCGATCATG
ATGTCCCACGCTAAGAATAATAGTATATAACGGACTTTCACGTACGACCC
CACTTGACCACAAGAGCAATAAATATCCATACTCACACGCGCGCAGNACG
AATCATGTCGACCGAATATCNGATGAGCCGGTACTAAGAATACGTAAAAG
ATGACAAATATAATTAGCCAAACAGGAGACACAATGAATCAAGCGACTNG
TCAATAATATATGATCCACACAACATACTACGTATATAATATGAGTGTGA
ATAGAGGTAGAGATATACCTCACACAACAATTTAATATATG

Query= MSMg01no540_c17.b1 MSMg01no540_c17.b1 CHROMAT_FILE:
MSMg01no540_c17.b1 PHD_FILE: MSMg01no540_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:21 2005
         (579 letters)



>mm_chr4_18962277_18963255
          Length = 979

 Score = 1052 bits (544), Expect = 0.0
 Identities = 568/576 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttacttgagttgtagagaagggttcattttcaggatcatgggtgcttcaaag 63
           ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 779 ggaattccttacaggagttgtagagaagggtttattttcaggatcatgggtgcttcaaag 720

                                                                       
Query: 64  gtgtccatttcactgaaaaccaaacagaaaccaaaaccaaaccaacaaaatcaaataacc 123
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtgtccatttcaccaaaaaccaaacagaaaccaaaaccaaaccaacaaaatcaaataacc 660

                                                                       
Query: 124 cataccatcttggatgataacttagaaaatctagtcttgcatgcatcaatttctggcagc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 659 cataccatcttggatgataacttagaaaatctagtcttgcatgcatcaatttctggcaac 600

                                                                       
Query: 184 tctgctagtggcatagtttcttgcaggttagcatctggatagagttccccctcagcagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tctgctagtggcatagtttcttgcaggttagcatctggatagagttccccctcagcagct 540

                                                                       
Query: 244 gccattgtttatataacccccaagagatgcctctgattcctccaagtttgagtggttttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gccattgtttatataacccccaagagatgcctctgattcctccaagtttgagtggttttc 480

                                                                       
Query: 304 tgaaacttaagcattttgtttacttacagaatcttaacaagcccctctccagaaaggaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgaaacttaagcattttgtttacttacagaatcttaacaagcccctctccagaaaggaac 420

                                                                       
Query: 364 gcttgagactgaggacatagctacaatcgacttctattaatgtggctgtttactttatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 419 gcttgagactgaggacatagctacaatcgacttctattaatgtggctgtgtactttatat 360

                                                                       
Query: 424 tgacatctgcctattcttactttggataaacctgtagacaccagattgttgggccacttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgacatctgcctattcttactttggataaacctgtagacaccagattgttgggccacttc 300

                                                                       
Query: 484 ataagagcctctggactgttttcttacagcctgtgttgttatattactgtcagcaatgga 543
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 299 ataagagcctctggactgttttcttacagcctgtattgttatattactgtcagcaatgga 240

                                               
Query: 544 acagttagttccttgtacttctcagtagcactcagg 579
           ||||||||||||||||||||||||||||||||||||
Sbjct: 239 acagttagttccttgtacttctcagtagcactcagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)