Query= MSMg01no540_d22.b1 MSMg01no540_d22.b1 CHROMAT_FILE:
MSMg01no540_d22.b1 PHD_FILE: MSMg01no540_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:27 2005
(622 letters)
>mm_chr4_35875765_35876786
Length = 1022
Score = 1075 bits (556), Expect = 0.0
Identities = 603/619 (97%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 5 gaattcaattccctaatgccttcatagcttgaacattttgtagttactttcagaattcac 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcaattccctaatgccttcatagcttgaaaattttgtagttactttcagaattcac 264
Query: 65 agatggctatactattttcttgatttatgatatttacatattgagactcagttcacttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatggctatactattttcttgatttatgatatttacatattgagactcagttcacttct 324
Query: 125 gcatcatcagggcaacagtacacagaagagaagggagcatttgatcaaatcacagccatt 184
||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatcgtcagggtaacagtactcagaagagaagggagcatttgatcaaatcacagccatt 384
Query: 185 atccacaattgacacttgtttatattgaaatgttctttaaaatcattagatttgaaaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccacaattgacacttgtttatattgaaatgttctttaaaatcattagatttgaaaagg 444
Query: 245 taaggtaaaggacatttttgtgggggagaaaataattttccttctgttaaaaatacatag 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 taaggtaaaggacatttttgtgggggagaaaatacttttccttctgttaaaaatacatag 504
Query: 305 caacctaaaatttttaagcagaaagaaagtgaaggctttcgaagtcatgatttctgacca 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 caacctaaaatttttaagcagaaagaaagtgaaggctttcgaagtcatgacttctgacca 564
Query: 365 tcatggctagaacaaaatactactagcaataacatatcaataagcatatgattctaattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatggctagaacaaaatactactagcaataacatatcaataagcatatgattctaattt 624
Query: 425 attcttccaaatcatattgttcattatccattggccaaatatttctcaatgtcctatatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 attcttccaaatcatattgttcattatccattggccaaatatttctcaatgtcatatatg 684
Query: 485 tatattcccaaatacttccagaggttctgatggtatagtagtaagtaaaatgggtgaaga 544
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 685 tatattcccaaatacttccagaagttctgatggtatagtagtaagtaaaatgggcgaaga 744
Query: 545 tatttcaatttcttttcatagaact-taaacttattagagtaacagagaanaggcacaag 603
||||||||||||||||||||||| | |||||||||| ||||||||||||| | ||| |||
Sbjct: 745 tatttcaatttcttttcatagaa-tgtaaacttattggagtaacagagaaaaagcataag 803
Query: 604 caaacggatacagtgcaga 622
|||| ||||||||||||||
Sbjct: 804 caaatggatacagtgcaga 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_d22.g1 MSMg01no540_d22.g1 CHROMAT_FILE:
MSMg01no540_d22.g1 PHD_FILE: MSMg01no540_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:28 2005
(611 letters)
>mm_chr4_35985331_35986339
Length = 1009
Score = 1147 bits (593), Expect = 0.0
Identities = 606/611 (99%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 tgggaaatgtaggacctcagtattttacagcaatcacagtgagtagatgaaaccagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgggaaatgtaggacctcagtattttacagcaatcacagtgagtagatgaaaccagaaag 750
Query: 61 acagcgggaaggggactatggttacaaaactgatccctccatgtagcggaagtgtacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acagcgggaaggggactatggttacaaaactgatccctccatgtagcggaagtgtacttg 690
Query: 121 agaaatgtagtaatcagtgctgattactgcccactgattgcataactttgctgactgagc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agaaatgtaataatcagtgctgattactgcccactgattgcataactttgctgactgagc 630
Query: 181 actctaatgtctttgtaacctttattgttgttctcctgcaatgaggaagtatagctcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actctaatgtctttgtaacctttattgttgttctcctgcaatgaggaagtatagctcagt 570
Query: 241 tgtgtagttttagatccacatgtctgtacttatattggcaaaggcagttgattttaaaaa 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 569 tgtgtagttttagatccacatgtctgtacttatattggcaaaggcaattgattt--aaaa 512
Query: 301 aaaaacatgataaatgatttagttttatgggtgtgtgttaattgcacatacaccacttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaaaacatgataaatgatttagttttatgggtgtgtgttaattgcacatacaccacttta 452
Query: 361 caaatcagaaacatgcttggaaatgcaaatagtgttcgtaaatactcaaatggactcact 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 451 caaatcagaaacatgcttggaaatgcaaatagtgttcgtaaatacgcaaatggactcact 392
Query: 421 attcagattatcagaacaaaatcgacatcatcatatcgtccatctcaataaatgcagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attcagattatcagaacaaaatcgacatcatcatatcgtccatctcaataaatgcagaaa 332
Query: 481 cgtttaaatgtataaggcaatctattattttatccacaaaggagataacaactgttctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cgtttaaatgtataaggcaatctattattttatccacaaaggagataacaactgttctaa 272
Query: 541 aactgctttctgttagtttcttttgcatgatatagagtatctacttgaaatatctactat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aactgctttctgttagtttcttttgcatgatatagagtatctacttgaaatatctactat 212
Query: 601 aaagttttgtt 611
|||||||||||
Sbjct: 211 aaagttttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1009
Length adjustment: 10
Effective length of query: 601
Effective length of database: 999
Effective search space: 600399
Effective search space used: 600399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
