BAC Information

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BAC

Clone NameMSMg01-540F19
Chromosome4 (Build37)
Map Location 18,766,342 - 18,766,674
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540F19.T7 (MSMg01no540_f19.b1)MSMg01-540F19.TJ (MSMg01no540_f19.g1)
ACCAG606631AG606632
length748752
length of high quality
(start - end)
549 (41 - 589)633 (71 - 703)
definitionCHROMAT_FILE: MSMg01no540_f19.b1 PHD_FILE: MSMg01no540_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:36 2005CHROMAT_FILE: MSMg01no540_f19.g1 PHD_FILE: MSMg01no540_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTTCCTACCTAAGGAAGGCAGTAAATCAAAACCAAGCATAACAGTATT
GCTGCCACAACTTTTATATCCACCTATCATGTGGAGAGAAAATGTACTAT
TCTTTCCTATTGTCAACTGTCAAGAGTTTTTTAAATTTAGTTTTTCCTTC
ATTCCTTTCTTCCATCCTCCATTCTTTCTTTCTTTTCTTTCCTTCTTTCC
TTTTTTCTTTTGTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCTTTCTTTTCTCCCTCCCTCCCTCCCCCTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGACTA
AGTCTCTACATAGTTCTGGTTGTCTACATAGTTCTACATAGAACTCACTG
TGAAGCCCATACTGGCATCAAAGAGATCTATTTGTCACTGACTCCCAGTT
GCTGGGATTAAAAGCATGTTAATTCTTAATTTAATTGAACAATATTTTTT
TCTCATGGGGATTAACTATTTATATCTGTTTATTCCATTGCAATGGATCA
CTCTATTCTGAAAATATATCTTATTTTTTTGTACCCAGCTATTTAAAAGA
GAAATGTTAATATACCATGGAATTAACTGGGTATAATGGTTCATGCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCGGTTCCTAAAAGGAAAGATGGAGTTGG
ATGGGAAAGGTGGCAAGAGAAATAATGAGCCAAGACAAAGTTCTCTGATC
AAGGCCCAATATTTAGTGTATGGCACTGAATATATATGGGAAAACTCAAA
GACCCATCCCGTTGTTTCAGCTAGGTTCTGTTGCTAGTTTCGGCTGGATT
GAGTTGCAAAGTAGGCTCTTCAGCAGCTCCATGGGCGGGCAGTTCTCAGT
TCTCTGGCAGGAAGATGTAAATGCAGCAAAGTCAGACTCCTGGCTCCAGT
GTCTGAGCAGTTTTGTTTGGCCAAATCAAGGCTGGGGGAAGGGCACAGTT
CCTCCCTTTTTATTTCTTAAAGATTAGCTGGATTGAGGCATAAGATTTCC
TTATTCTCCATGATCCTGCCTGGGAATTATTGTGGCTGGTGGCCATGTTT
GTCTTAGGCCTGAAACTATTGGACTCTTTCGGAGAACACGTGCAGCTTGT
TTGTATTTATTTGCACAAACACGATCTTTTGGTGTTTATTATGAACAAAC
ATCTCCTCTTGGCACATGCCTCTATCTTAGGTTGAAAAAAGCCATAGACC
AGTGGCCCATCTTTGGCTGCTGGCCCTCATTGCACACATTTTTCCCATTC
AGACCAAAGCCACAAAATGCACTCAATGCATCTCTTCATAGTGATGAATA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_f19.b1 MSMg01no540_f19.b1 CHROMAT_FILE:
MSMg01no540_f19.b1 PHD_FILE: MSMg01no540_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:36 2005
         (549 letters)



>mm_chr4_18766323_18767271
          Length = 949

 Score =  559 bits (289), Expect = e-163
 Identities = 331/363 (91%), Gaps = 30/363 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttcctacctaaggaaggcagtaaatcaaaaccaagcataacagtattgctg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaattcattttccaacctaaggaaggcagtaaatcaaaaccaagcataacagtattgctg 293

                                                                       
Query: 65  ccacaacttttatatccacctatcatgtggagagaaaatgtactattctttcctattgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccacaacttttatatccacctatcatgtggagagaaaatgtactattctttcctattgtc 233

                                                                       
Query: 125 aactgtcaagagttttttaaatttagtttttccttcattcctttcttccatcctccattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aactgtcaagagttttttaaatttagtttttccttcattcctttcttccatcctccattc 173

                                                                       
Query: 185 tttctttcttttctttccttctttccttttttcttttgtccttccttcctttcttccttc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 172 tttctttcttttctttccttctttccttttttcttttgtccttccttcctt--------- 122

                                                                       
Query: 245 cttccttccttccttccttccttccttccttctttcttttctccctccctccctccccct 304
                          ||||||||||||||||||||    ||||||||||||||| |||||
Sbjct: 121 ---------------ccttccttccttccttcttt----tctccctccctccctgcccct 81

                                                                       
Query: 305 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 364
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  cttt--ttctttctttctttctttctttctttctttctttctttctttctttctttcttt 23

              
Query: 365 ctt 367
           |||
Sbjct: 22  ctt 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)